CI01000009_00611583_00617762 (TFG)


Basic Information

Item Value
gene id CI01000009_00611583_00617762
gene name TFG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 611305 ~ 617762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00611583_00617762.mRNA
TGATAAATGGCCTGCTTCTTTAATAAACTGCTTAACTGCACAAGTAATAGTGCAGTAATAGTAAGAGTGCTATAATGGCTGGCATAAGTGGCCATTTTGACAATAATTTGTATTTATTCTGCATTTGATTCATATAATTTCAGCAATTTTGTGTGTCGTTTGCCATTGTATTAAATTGAATACCTTGCTAGATCTGTATTTTTAAATACACACACACACATACATGCATACATATATTTAAAATACAGCATTTACATTAAAAAAGTTTTTCCAGCAGTATGAATGGCCAGCTGGACCTGAGTGGAAAGCTGATCATTAAAGCTCAGTTGGGGGATGATATTCGTCGTATCCCCATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGCGAGTCTTTCGTGGGCAGCTACAGAGCAGCGATGAAGTTGCCATCAAATATAAGGATGAAGATGATGACCTTATCACCATCTTCGACAGTTCTGATTTGTCCTTTGCGATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTGAATGGGCAGCCTCGGCCACTGGAGTCATCTCAGGTGAAGCACCTGCGTAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCCCCCTCAGAGTCTGTCCCAGAGAGCACCAACCCAGAAACCGGTATACACATGAACTCTCCCGGAGTGATTCTCTTGTTCTTCATATCCAATACTGTAACTAAAGCATTTGAAGCATATTCAACAATGAAGCATGCCCCGCCGGTTAGTGCTGCTAGCATGTCTGCATTTGACCCCCTGAAGAACCAGGAAGAGGTCAACAAGAATGTCATTTCTGCATTTGGCTTGTCTGAGGACCCTGCCCCAGTTCCAGCTGTAGCCGCCACCGCTGCTGCAGAGGAGCGCTCTGCTACTCCAGACAGTATTGCCTCTTCATCCTCTGCAGCGCCCCCTTCTGCTGTGGCTCCCCAGGCTCCCCCACCTTACTCAGGGGTCCAACAACCTCCCTCTAGTACTATGGATG

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00611583_00617762.mRNA True 1053 mRNA 0.45 5 611305 617762

Neighbor

gene id symbol gene type direction distance location
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 1930 608513 ~ 609375 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding upstream 5235 605366 ~ 606070 (+)
CI01000009_00603498_00605392 NA coding upstream 5913 603228 ~ 605392 (+)
CI01000009_00547369_00551459 NA coding upstream 59089 547369 ~ 552216 (+)
CI01000009_00541592_00545933 CMSS1 coding upstream 65308 540769 ~ 545997 (+)
CI01000009_00620687_00621072 NA coding downstream 2925 620687 ~ 621537 (+)
CI01000009_00704243_00710805 NA coding downstream 86303 704065 ~ 710805 (+)
CI01000009_00719164_00724772 SRPX coding downstream 101402 719164 ~ 725051 (+)
CI01000009_00805606_00808374 NA coding downstream 187142 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 233480 851242 ~ 853461 (+)
G50855 NA non-coding upstream 20692 590132 ~ 590613 (+)
G50735 NA non-coding upstream 72794 538171 ~ 538511 (+)
G50719 NA non-coding upstream 106686 504418 ~ 504619 (+)
G50631 NA non-coding upstream 115344 395375 ~ 495961 (+)
G50633 NA non-coding upstream 222183 388750 ~ 389122 (+)
G50881 NA non-coding downstream 5972 623734 ~ 623957 (+)
G50883 NA non-coding downstream 18712 636474 ~ 636705 (+)
G50880 NA non-coding downstream 27023 644785 ~ 645049 (+)
G50878 NA non-coding downstream 76264 694026 ~ 695215 (+)
G50902 NA non-coding downstream 79843 697605 ~ 697840 (+)
CI01000009_00094836_00095813 NA other upstream 515518 94371 ~ 97230 (+)
G50920 NA other downstream 152079 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 805085 1429873 ~ 1435328 (+)
G51122 NA other downstream 1062384 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1276473 1897343 ~ 1919516 (+)
G51274 NA other downstream 1637337 2255099 ~ 2350486 (+)

Expression


Co-expression Network