G223241


Basic Information

Item Value
gene id G223241
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42939207 ~ 42941673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302903
atttaatttcacttGCTGAGTATGTGATGCATTCCTAGTGCCATCATTTTAATTACCATGCTGGAGTTCAGTGAActctttagctccacccatttttttaaactaatgttTGCCTTAATTTTATACACTTTTACTGTATTGATAAGGCTAAATGAGACACCTAAAATTAATCAAAAGTCCATAGTATTGAGACCAAGGTTGTATCTTAGTAGGCATTGGCTCTGGGAGATACTTAAGATACTGCTAGCTTCCTGCCATGTTGGTGTTACAGTAATATAATCTATTAGAGATGTCAGCtgctaaaaaacatttttttttttttttggagaaaaaaaaaagaacctgtCAGTCACTCTCATTCCTGCTTTGTTACCCAGAGTTTAGCTATTCAGGCTTAAACTCAgcttctctgtctgtctaactCTCCTCAGCCTGTCTAGCCTTCTATTTTAGCGTAAAGAGgaacttcctcttacagcgtttCTCCTTTGTCTGAGTGACTCACCTCTGATAAGAGGCTCATAGCTGTCTGGTGGTGATATGCTCCTGGCTGAGTTCCTTCAGAACCCGTCAGCAAAACCAGAAACCTGCAGGTGGGAACTGTAGAATATGCTAGCTATTTACTAGCCAGCATTGAAAATTAGACTATGTTTTTAGACTGACTGACCAAATCAGATTTTGGCAAATTTAGTTTGTATCAAGAAAGAAACCTCAtgaaggccctattttagcaatctataaaACACAAGTCAATTGCACATACCCCTTTGGTATCGCGAGGGTGCAAAAAATGTGCCTTGCACAGCttaaaacacgcaaaaggcatgtgctaattctcttaattaatcatggttcTGGTTAATTTTGatcttaacataaaataaaccaatcaatgtaTGAGTTGCCATATATCTTTTTCTCTTATCACAATTAAATAGAggtatttttgccattttctttctgTGTGACTTGTTGCCTTCATACTGTATAGCATCTGTCGtgcaattaaaacaaacaaacgaggaggaggagaaggaggagaaggatAGGATGTCCTGAttacaaataaagaaacaaacacactgaaaaaaaaaacaggaaaaaagaaagaaagttaggaaataaattattatataacccCTATAGTTTAGTTAACTAGTCGGAACCAAGTTTAGCCCTTTAATTTATGAGGTAACTCCTCGATGTGCCCTTATTTTTATAAAGCAGCCACATTGACCATAATGACTCTATCTCTCTGCTGGCTGCTGTATTGGAGCAAAATtcactttaaatgtttaaatacccTGAAAAAGGTACATTatcttaaaaaagtatttgcatgAGAATCAAATGTATTAGACAGAAAAGAATGAATGGTTTTAGACAGTATATGCTTAACTCactttgaatgttttttttttttttgtaaaaaaataaaataaataataataataataaaaatgaaggaTGAGCAgtcttatacagtatatacacatataattaCGTAGGCTTAATATTATTGAAAGATcggttattaaaaaaaaaagtggtgctCACAGATTTTTGAGAGTTGCGAGTAGAGTGTAAGTAGTCTTGTTTGCCACGAGTGCAGCTGCATTGTACAAAAAGTtgtataaactaaactaaactaaactaagcggTTTGGGCTCACTGTGCGGAAATGCTGTTCGTTCTGAAGGTTTGAACGTTTCCTCAGTGCTACAGGAGGGCTGTACTTCCATGCAACTGACGTTTTGCACAGTGCATTAGTGCCATCCACAGTGTTACATGTAGTGCGGGTGTTCTTGAGTTTGTGTAGATGTTGATTTGGGAACAAATGAATGAAATCGAATGGCTTCACAAAGCTTTCATAAGCTTTCACCTTCCTTTAGCCAATGTAGAGTACTGTGTAAAGGTCAGAGACCATTGTTCATTTCTTTAACTGAAGGATATCCTGTTAAAATAAGTACATTAAGTACAATTTATTGATTGTGGGTGGGGCTGCAAGATATATCGTTCAACTTAAggcaagaagtagatacacagcactgtctctgtgtctgtgtgagtgacgggctactgctgcctgagaagcgcaagGGGGAGGGCAAGGGGAGTCGAAAGCTGTgcagttccagttacagctgaatttacgATTTTAATGCCcaattaaagggccgattactgttggtTTGCTGTTCTActcgggttttgagttgagcttgGCGCTggctcagctcttgattggtcagCAAGCGAGACAGCACACGGATGGGGGCGGTAATCAATATGAAGCTTCCATGTAATGGATTATGTGACtgcaagtttttaaaaaaatgaaagaaggtCTCTGGTGTTTGCACTGTAATTTACTGTGTAATTGAAGTGAATTTAAAACGCAATGCTGTTAAATGCTGatggtgaaaataaatgaataaatgaaagaatgatcgaataaacaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302903 True 2467 lncRNA 0.37 1 42939207 42941673

Neighbor

gene id symbol gene type direction distance location
rab11fip2 rab11fip2 coding upstream 3372 42908505 ~ 42935835 (+)
fam204a fam204a coding upstream 136922 42774245 ~ 42802285 (+)
LOC103047539 NA coding upstream 217273 42711460 ~ 42721934 (+)
LOC103043683 NA coding upstream 717153 42215743 ~ 42222054 (+)
LOC103042542 NA coding upstream 1644957 41287961 ~ 41294250 (+)
LOC103028407 NA coding downstream 247687 43189360 ~ 43193440 (+)
LOC103043584 LOC108426108 coding downstream 359213 43300886 ~ 43310949 (+)
LOC111196053 NA coding downstream 389844 43331517 ~ 43335986 (+)
LOC103041531 runx3 coding downstream 538746 43480419 ~ 43569433 (+)
nolc1 nolc1,LOC102197487,LOC107717830,LOC102780538,LOC101478979,LOC102291991 coding downstream 652374 43594047 ~ 43607194 (+)
G223218 NA non-coding upstream 208284 42730597 ~ 42730923 (+)
trnag-gcc_49 NA non-coding upstream 236979 42702158 ~ 42702228 (+)
trnag-gcc_48 NA non-coding upstream 237148 42701989 ~ 42702059 (+)
trnag-gcc_47 NA non-coding upstream 237480 42701657 ~ 42701727 (+)
G223207 NA non-coding upstream 308944 42629977 ~ 42630263 (+)
G223245 NA non-coding downstream 72316 43013989 ~ 43014235 (+)
G223274 NA non-coding downstream 254395 43196068 ~ 43203769 (+)
G223276 NA non-coding downstream 270717 43212390 ~ 43214161 (+)
G223280 NA non-coding downstream 332263 43273936 ~ 43277666 (+)
G223284 NA non-coding downstream 345921 43287594 ~ 43336061 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other upstream 567626 42243811 ~ 42371581 (+)
LOC103046574 NA other upstream 1745998 41184961 ~ 41193209 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 1865891 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 2586551 40349807 ~ 40352656 (+)
zfyve21 zfyve21 other upstream 2599555 40331073 ~ 40339652 (+)
G223269 NA other downstream 221608 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 669950 43611623 ~ 43615389 (+)
mcu mcu other downstream 738478 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 1954504 44896177 ~ 44947346 (+)
tmem14a tmem14a,LOC108425445 other downstream 2024023 44965696 ~ 44968097 (+)

Expression


Co-expression Network