G223276


Basic Information

Item Value
gene id G223276
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 43212390 ~ 43214161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302963
TCAGTTAAAATTGCATTGTTTGTTGAACTGGTTAACTTTaggctgtgattttttttttagataactCTCGAAAATCTTGAAGTCTCtatgaaatctaaaaacaattTTTTGAATGTTTAACTTCAGTACAGCCAATTTGAGTGTGGTATCATTCGCAGCTCTAACAATAGACTTCCGAGATAAATGgaatgatttataaaaatagGATAAAAGATGTTTCTGTAATTTCCCACctgaaatattaaatgtttgcacTTGTGTAGGTAAAGTCAGGATTGGTCCAAACTTTCCCAACTCACTTTGTCCCGACGCAGTGGTGCTCATAACTGGTCCTAAAGATCTACCACCCTCTAACTgcacacacctgatccaggtaATAAAGGTCTCCAGAGACATGTGAACATTCTAGACTCAGGTGTGTTAGTGTAAGATCTTCAGGACCTGGAATGAGCAcacctgtctctgtgtgttcagCATGTCCATGGCACAGAGACATTTCCTAATAGACAATCATCTGATACACAAAAACAGACAGTGCACAACATTCCGAAgagcatcactactgcactatcCCTGTCACGACGGCTCACCATCACAGAAATGCACTCACTGACGCAAAGACAGTGGAGGATAGGTGGCTGAAGATGAGACAGAAAGATGAGACAGAGGTAAACATGAGAACAGTGTGGAGCACTGTGTGAACAAATGGGAACGAGCACTACATCTAACAGAGGCTAAGAACCCTGACATTCCAAACATGATCTCATGATCCAACAGGAAATTGGTAATTTTTTAGGAACATCTGGTCACTGAACAGGGTTCTGAGCCACTATATGAAAACAATGGGAGAACATGGAAGAATCTGAAGCACTGAAATGATGGTAACACTGGGTATAATGGAACTGGATGTGAATGAACGATGCTCTACAGGTCACTACACACTTAGAGACGCTTTGTTACCTGAACAGGACTCAAAACTATCCAAACTGCGGCTGAAGAGAGAAACATCAGTGGAGTTAATGTAAGTggaccttttttcttttttgtttaaacatCAGTATTATTAACcctctaaatcaggggtgtccaaactacgccccgcgggccatttgcggcccgtttccttttatggagcggcccgtgaggtatttcagaaatagaatgaaagttggcccactgttaagcaggtttttataatgtgagattcaaagtttgaacgctaggtgtcagaaacgagccaacaagtctaaaagcggagagagtgcgcatttctagctcagaaaagcgggcaacagagtctaaaagcggagagagtgcacatttctagcacagaaaaacggggcaaaatagtctaaaaacggaaagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagtgtgacATTTGTGTAACATTTGTCCTGGCCTCACCTTTACTCAGGCAGGTAAATAGGGGTCAGTAAAAGGGATTAACACAGTTAAATATGACAGCAAAAGCTGTGAGGTTTTAGTTTGGTAGCTGCCTTACTCAAACACACTGATTCTGCTTATTAACTAATGGGGTAAATCAAGGTGTCTGAGTGTTTGACCAGACCTCCAGGCCTGGAGTTGTGTCCCTGAGGTAAAGAAGTTTAAAAAAGAATCAGA

Function

NR:

description
PREDICTED: involucrin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302963 True 1667 lncRNA 0.42 3 43212390 43214161

Neighbor

gene id symbol gene type direction distance location
LOC103028407 NA coding upstream 18950 43189360 ~ 43193440 (+)
rab11fip2 rab11fip2 coding upstream 276555 42908505 ~ 42935835 (+)
fam204a fam204a coding upstream 410105 42774245 ~ 42802285 (+)
LOC103047539 NA coding upstream 490456 42711460 ~ 42721934 (+)
LOC103043683 NA coding upstream 990336 42215743 ~ 42222054 (+)
LOC103043584 LOC108426108 coding downstream 86725 43300886 ~ 43310949 (+)
LOC111196053 NA coding downstream 117356 43331517 ~ 43335986 (+)
LOC103041531 runx3 coding downstream 266258 43480419 ~ 43569433 (+)
nolc1 nolc1,LOC102197487,LOC107717830,LOC102780538,LOC101478979,LOC102291991 coding downstream 379886 43594047 ~ 43607194 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding downstream 556773 43770934 ~ 43785138 (+)
G223274 NA non-coding upstream 8621 43196068 ~ 43203769 (+)
G223245 NA non-coding upstream 198155 43013989 ~ 43014235 (+)
G223241 NA non-coding upstream 270717 42939207 ~ 42941673 (+)
G223218 NA non-coding upstream 481467 42730597 ~ 42730923 (+)
trnag-gcc_49 NA non-coding upstream 510162 42702158 ~ 42702228 (+)
G223280 NA non-coding downstream 59775 43273936 ~ 43277666 (+)
G223284 NA non-coding downstream 73433 43287594 ~ 43336061 (+)
LOC111196054 NA non-coding downstream 119971 43334132 ~ 43335060 (+)
G223296 syf2,LOC107667968,LOC107734269,LOC107679146 non-coding downstream 131486 43345647 ~ 43354563 (+)
G223349 NA non-coding downstream 445353 43659514 ~ 43740309 (+)
G223269 NA other upstream 46256 43163281 ~ 43166134 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other upstream 840809 42243811 ~ 42371581 (+)
LOC103046574 NA other upstream 2019181 41184961 ~ 41193209 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 2139074 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 2859734 40349807 ~ 40352656 (+)
G223335 micu1 other downstream 397462 43611623 ~ 43615389 (+)
mcu mcu other downstream 465990 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 1682016 44896177 ~ 44947346 (+)
tmem14a tmem14a,LOC108425445 other downstream 1751535 44965696 ~ 44968097 (+)
polh polh other downstream 1766241 44980402 ~ 44988010 (+)

Expression


Co-expression Network