polh (polh)


Basic Information

Item Value
gene id polh
gene name polh
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 44980402 ~ 44988010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU303518
GAGAATCTGTGGCAGAGTTTGTTGTCGCGGGAAATTTCTTCCTGCAGCAGAATTTTGTCGTCataaattacttattttacttcTGATTATGAAATCATAAAGTCTAATCTCAGGATGTCGGGACGCTTTGATGTTTTCCCGCGCTTTTCCTGTGAGGAGTAAAGTTAAGTTCaggtagctaactaagctaagctaacctagttGTAGGCTTGTGAGCTGGACTACTGTCTGTTCGCTtgggttagcttagcttagcttagttcaGGTTTAGTTTATCTTAGCTTATCTTATTTTAGTTAGTGTTTGGACTGGCCCTCTGCTCTCGGTGATGGAGACGGGTAAGGAGAGGGTGGTCGCGCTGGTGGATATGGACTGTTTCTACGTGCAGGTGGAGCAGAGGATGAACCCAGAGCTGAGGCACAAGCCCTGCGTGGTGGCTCAGTACAAGACCTGGAAAGGAGGAGGTATTATAGCTGTGAGTTATGAAGCTCGGGCTCACGGGGTCACCAGGAACATGTTCGCAGACGACGCGAAAAAACTGTGTCCAGACCTTCGAGTCGCCAGAGTGAGAGAGTCTCATGGCAAAGCTGATCTGACGAAGTAAGTTCTCCCCTGTGGAGCT
>XM_022684779.1
CTGGAAGAGGTGGTtaagtgggtattctcctctGTGGAGAATCTGTGGCAGAGTTTGTTGTCGCGGGAAATTTCTTCCTGCAGCAGAATTTTGTCGTCataaattacttattttacttcTGATTATGAAATCATAAAGTCTAATCTCAGGATGTCGGGACGCTTTGATGTTTTCCCGCGCTTTTCCTGTGAGGAGTAAAGTTAAGTTCaggtagctaactaagctaagctaacctagttGTAGGCTTGTGAGCTGGACTACTGTCTGTTCGCTtgggttagcttagcttagcttagttcaGGTTTAGTTTATCTTAGCTTATCTTATTTTAGTTAGTGTTTGGACTGGCCCTCTGCTCTCGGTGATGGAGACGGGTAAGGAGAGGGTGGTCGCGCTGGTGGATATGGACTGTTTCTACGTGCAGGTGGAGCAGAGGATGAACCCAGAGCTGAGGCACAAGCCCTGCGTGGTGGCTCAGTACAAGACCTGGAAAGGAGGAGGTATTATAGCTGTGAGTTATGAAGCTCGGGCTCACGGGGTCACCAGGAACATGTTCGCAGACGACGCGAAAAAACTGTGTCCAGACCTTCGAGTCGCCAGAGTGAGAGAGTCTCATGGCAAAGCTGATCTGACGAAGCAGTGGTTGTACGATTTGTGCAGAGGAATTGAGTTTGAGCCAGTGAAGCCCAGACAGCTTCCTAAATCCATCGGCTGTAGCAAGAACTTTGCAGGAAAGACGGCTCTAGCTACGAAAAAACAGGTCCAGCACTGGCTGCATCAGCTTGCCTTGGAGCTGGAGGAGAGATTGAATAAGGATCGAGAAATGAACGGTCGAGTGGCCAAGTTGCTGACTGTGGGTGTCCGTCAGGCTGGAGATAAAAGACTGAGTAGCTTCTCCCGATGCTGTGCTCTAGCGCGCTATGAAGCTTCAAAAATGACTGCTGATAGCTTAGCTATTATTAAGAGCCTTAACACTGCTGGCAGCCATCAGGAGGCATGGTGTCCTGCTCTCACCTGTCTCCATCTGTCTGCCAGCAAGTTCAGCGACACTTCATCAGGAGGAATAGTCAGTTTCCTCAGCAGTGATGTGGCACCAACTCAGTCTCTTCTGGGCTCCACTCAGACTCAGTCTCCCTCTAAAACcgaaacagcagcagctaagaAGCCAGGAGCGATCCAGACCTTTTTCCAAAAAGCAGCTgagaagaaaaagacagaaataaatCTGAAGAAAAAGGAAACCGATGACCTTGCGTCTTCAACCTCTGAGAACCTTTCCAGTCCGTCTCAGAAACCAGCAGTGTCTAATACATCTATTTCATCGTTTTTCCAAAGAAAGAGTTTGGAGAAAAACCTGCAAGTGGGGACTGGGCTCACAAGCAGTGAACAGGTTGAATGGATGAAAGAAAGCAGTGTGGACTCTGTGGAACGATCTCCAGCTCAGACGCTTCCTCAGGACTTCTCAGGTGAGTCGTACTCTTTTTCTGTTGAAGCAGAACAAGACGGTACAAGCCTTCTGGAGCACACAGACTTTAAAGACACCAGAGAGGATTTTCACACCTGCGAACGCTGTGGAGAAGAAGTGCTGGTGTGGGAAATGCCGGAACACAATGATTATCACTTTGCACTCGACCTGCAGAAGTCTTTCTCCTCTTCATCAGCTTCCTCTTCTTCTGCCTCTACCAGCGACCCCCTCAGGGACACGGCAGCCCTGCAGTCTTCACGTGGAAAGAGCAGGTCCAAAACCCAGGCTGGACCACAGGCAAAAAGAGCAAGAGCAGCAGAGACCACAGTCACTCTTCATTCTTTCTTTAAGAAGTCTTAGAATGAAGAAATGCTTCATAAAGAGAATTATTGCCGTAAGCACTTTTTCAGACTATTAGACACAGTCTTAATATAATCCAATCATTCAATCATGCAaaaatcacttgtttttttttttaaataactgataCATGGGTTTGTGACCAACTGCTCAGTCATGATGGCAGGGAATGTATctacaatgtttaaaataaaatgttcttaaacAATTGTGTATTCTTGTCAGTGAAATATATAAATTGTAAACTATGAAAATGCTAAAAGATTAAACTAAAAGATTGAAGATGGAAAA

Function

symbol description
polh Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in error-prone translesion synthesis and response to radiation. Predicted to act upstream of or within DNA biosynthetic process and DNA repair. Predicted to be active in nucleus; replication fork; and site of double-strand break. Human ortholog(s) of this gene implicated in xeroderma pigmentosum variant type. Orthologous to human POLH (DNA polymerase eta).

NR:

description
DNA polymerase eta

GO: NA

KEGG:

id description
K03509 POLH; DNA polymerase eta

RNA

RNA id representative length rna type GC content exon number start site end site
TU303518 False 622 TUCP 0.48 2 44980438 44981140
XM_022684779.1 True 2116 mRNA 0.46 6 44980402 44988010

Neighbor

gene id symbol gene type direction distance location
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 16297 44951043 ~ 44964105 (+)
myom2 myom2,LOC107660212,LOC107572023 coding upstream 868552 44060541 ~ 44111850 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 1195264 43770934 ~ 43785138 (+)
nolc1 nolc1,LOC102197487,LOC107717830,LOC102780538,LOC101478979,LOC102291991 coding upstream 1373208 43594047 ~ 43607194 (+)
LOC103041531 runx3 coding upstream 1410969 43480419 ~ 43569433 (+)
otor otor coding downstream 23251 45011261 ~ 45015961 (+)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding downstream 54640 45042650 ~ 45099054 (+)
dnajc12 NA coding downstream 171528 45159538 ~ 45161992 (+)
LOC103032313 LOC103032313,LOC108442675,LOC105923605,LOC101067607 coding downstream 174706 45162716 ~ 45166158 (+)
gpatch11 NA coding downstream 179336 45167346 ~ 45171173 (+)
G223613 gsta3 non-coding upstream 6993 44969810 ~ 44973409 (+)
G223551 NA non-coding upstream 368723 44607703 ~ 44611679 (+)
G223507 NA non-coding upstream 865266 44110875 ~ 44115136 (+)
G223501 NA non-coding upstream 926959 44052482 ~ 44053443 (+)
G223502 NA non-coding upstream 929073 44050673 ~ 44051329 (+)
G223619 NA non-coding downstream 1049 44989059 ~ 44991630 (+)
LOC111196013 NA non-coding downstream 35154 45023164 ~ 45024529 (+)
G223631 NA non-coding downstream 126616 45114626 ~ 45115824 (+)
G223632 NA non-coding downstream 129013 45117023 ~ 45117227 (+)
G223635 NA non-coding downstream 133270 45121280 ~ 45121699 (+)
tmem14a tmem14a,LOC108425445 other upstream 12305 44965696 ~ 44968097 (+)
mcph1 mcph1 other upstream 33056 44896177 ~ 44947346 (+)
mcu mcu other upstream 1211402 43680151 ~ 43769000 (+)
G223335 micu1 other upstream 1365013 43611623 ~ 43615389 (+)
G223269 NA other upstream 1814268 43163281 ~ 43166134 (+)
LOC107197130 NA other downstream 183832 45171842 ~ 45184947 (+)
gng4 gng4 other downstream 259360 45247370 ~ 45258924 (+)
arid4b arid4b other downstream 304992 45293002 ~ 45333281 (+)
G223798 NA other downstream 409686 45397696 ~ 45402815 (+)
G223850 NA other downstream 536388 45524398 ~ 45532148 (+)

Expression


Co-expression Network