G223637 (mypn)


Basic Information

Item Value
gene id G223637
gene name mypn
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45124879 ~ 45125201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU303550
ACCTTTGGTACAGGAATTCCAACCACTTTACAggtaaaagtaacaggaattccCTCAACAGCTTTGAAATTCTTAAGCTTCTTCTCGAACAGCGGTGCGATACACCTGCCCGTGGGAATCTCATCGTGCTGAACCTCATCGTCCGATTCCTCCACCGGCGTTCTCTCCAGCCGGAACTCAATCTCACTCATCAGCCTCTGTTCAAAGTTAGAGACTTTGTATTCctgaatataatacaaaaatataatacgTTAACAAAAATGTGCTCAAGTGTGCTCAATGCTTCAGTCTATAAACTatgatttttattcaaaatttcAGTG

Function

symbol description
mypn Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1KK and nemaline myopathy 11. Orthologous to human MYPN (myopalladin).

NR:

description
PREDICTED: myopalladin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303550 True 323 lncRNA 0.41 1 45124879 45125201

Neighbor

gene id symbol gene type direction distance location
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 25825 45042650 ~ 45099054 (+)
otor otor coding upstream 108918 45011261 ~ 45015961 (+)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 160774 44951043 ~ 44964105 (+)
myom2 myom2,LOC107660212,LOC107572023 coding upstream 1013029 44060541 ~ 44111850 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 1339741 43770934 ~ 43785138 (+)
dnajc12 NA coding downstream 34337 45159538 ~ 45161992 (+)
LOC103032313 LOC103032313,LOC108442675,LOC105923605,LOC101067607 coding downstream 37515 45162716 ~ 45166158 (+)
gpatch11 NA coding downstream 42145 45167346 ~ 45171173 (+)
lyst lyst coding downstream 60443 45185644 ~ 45245378 (+)
b3galnt2 b3galnt2,LOC107667096 coding downstream 140731 45265932 ~ 45277765 (+)
G223636 NA non-coding upstream 1925 45122629 ~ 45122954 (+)
G223635 NA non-coding upstream 3180 45121280 ~ 45121699 (+)
G223632 NA non-coding upstream 7652 45117023 ~ 45117227 (+)
G223631 NA non-coding upstream 9055 45114626 ~ 45115824 (+)
LOC111196013 NA non-coding upstream 100350 45023164 ~ 45024529 (+)
G223640 NA non-coding downstream 2046 45127247 ~ 45127447 (+)
G223642 NA non-coding downstream 9475 45134676 ~ 45135048 (+)
G223643 NA non-coding downstream 13143 45138344 ~ 45139201 (+)
G223644 NA non-coding downstream 16248 45141449 ~ 45141684 (+)
G223647 NA non-coding downstream 24065 45149266 ~ 45149510 (+)
polh polh other upstream 136869 44980402 ~ 44988010 (+)
tmem14a tmem14a,LOC108425445 other upstream 156782 44965696 ~ 44968097 (+)
mcph1 mcph1 other upstream 177533 44896177 ~ 44947346 (+)
mcu mcu other upstream 1355879 43680151 ~ 43769000 (+)
G223335 micu1 other upstream 1509490 43611623 ~ 43615389 (+)
LOC107197130 NA other downstream 46641 45171842 ~ 45184947 (+)
gng4 gng4 other downstream 122169 45247370 ~ 45258924 (+)
arid4b arid4b other downstream 167801 45293002 ~ 45333281 (+)
G223798 NA other downstream 272495 45397696 ~ 45402815 (+)
G223850 NA other downstream 399197 45524398 ~ 45532148 (+)

Expression


Co-expression Network