G223640


Basic Information

Item Value
gene id G223640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45127247 ~ 45127447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU303553
CTGAAAACGCTGAAGCATTAtattagttaaaatatttatttactacgGTTGAAAAGCTGGAGTTTGATTAACAGAAGCCGTTTAGTAATAATCTACTGAGCGCAGCAGAACCAGCAGAAATCCTCTGTACCTCGTCATAGTTAATGATAGTTGCAGTTGGAATGTTTGGTCCAAGCGATCTGCTTGCTTCCCACCCAAAAT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009056 catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00500 Starch and sucrose metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU303553 True 201 lncRNA 0.39 1 45127247 45127447

Neighbor

gene id symbol gene type direction distance location
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 28193 45042650 ~ 45099054 (+)
otor otor coding upstream 111286 45011261 ~ 45015961 (+)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 163142 44951043 ~ 44964105 (+)
myom2 myom2,LOC107660212,LOC107572023 coding upstream 1015397 44060541 ~ 44111850 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 1342109 43770934 ~ 43785138 (+)
dnajc12 NA coding downstream 32091 45159538 ~ 45161992 (+)
LOC103032313 LOC103032313,LOC108442675,LOC105923605,LOC101067607 coding downstream 35269 45162716 ~ 45166158 (+)
gpatch11 NA coding downstream 39899 45167346 ~ 45171173 (+)
lyst lyst coding downstream 58197 45185644 ~ 45245378 (+)
b3galnt2 b3galnt2,LOC107667096 coding downstream 138485 45265932 ~ 45277765 (+)
G223637 mypn non-coding upstream 2046 45124879 ~ 45125201 (+)
G223636 NA non-coding upstream 4293 45122629 ~ 45122954 (+)
G223635 NA non-coding upstream 5548 45121280 ~ 45121699 (+)
G223632 NA non-coding upstream 10020 45117023 ~ 45117227 (+)
G223631 NA non-coding upstream 11423 45114626 ~ 45115824 (+)
G223642 NA non-coding downstream 7229 45134676 ~ 45135048 (+)
G223643 NA non-coding downstream 10897 45138344 ~ 45139201 (+)
G223644 NA non-coding downstream 14002 45141449 ~ 45141684 (+)
G223647 NA non-coding downstream 21819 45149266 ~ 45149510 (+)
G223780 NA non-coding downstream 237843 45365290 ~ 45365938 (+)
polh polh other upstream 139237 44980402 ~ 44988010 (+)
tmem14a tmem14a,LOC108425445 other upstream 159150 44965696 ~ 44968097 (+)
mcph1 mcph1 other upstream 179901 44896177 ~ 44947346 (+)
mcu mcu other upstream 1358247 43680151 ~ 43769000 (+)
G223335 micu1 other upstream 1511858 43611623 ~ 43615389 (+)
LOC107197130 NA other downstream 44395 45171842 ~ 45184947 (+)
gng4 gng4 other downstream 119923 45247370 ~ 45258924 (+)
arid4b arid4b other downstream 165555 45293002 ~ 45333281 (+)
G223798 NA other downstream 270249 45397696 ~ 45402815 (+)
G223850 NA other downstream 396951 45524398 ~ 45532148 (+)

Expression


Co-expression Network