G223647


Basic Information

Item Value
gene id G223647
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45149266 ~ 45149510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU303562
GGTGTGCAGCAGCGCGCGCCCCCCGGCTGATCAGATCTGGAGTTCAGGTGAAATAAAGTCCCCGGATCTTCACAGTGATTGTGATTATGATCATCGGTTATTTCTAGAAAGTCCTCATCCATGGTGGCGCGCGGAGTCGCGGGGGTCGCGAGGCGCTTTTAATCCGGATTCAGTCTTTAAATCGGAACATGTTTAAATCCGCCCGAATCAGCGTGTTTTTCTcctgtgaagtcagacaccacgCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303562 True 245 lncRNA 0.53 1 45149266 45149510

Neighbor

gene id symbol gene type direction distance location
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 50212 45042650 ~ 45099054 (+)
otor otor coding upstream 133305 45011261 ~ 45015961 (+)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 185161 44951043 ~ 44964105 (+)
myom2 myom2,LOC107660212,LOC107572023 coding upstream 1037416 44060541 ~ 44111850 (+)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 1364128 43770934 ~ 43785138 (+)
dnajc12 NA coding downstream 10028 45159538 ~ 45161992 (+)
LOC103032313 LOC103032313,LOC108442675,LOC105923605,LOC101067607 coding downstream 13206 45162716 ~ 45166158 (+)
gpatch11 NA coding downstream 17836 45167346 ~ 45171173 (+)
lyst lyst coding downstream 36134 45185644 ~ 45245378 (+)
b3galnt2 b3galnt2,LOC107667096 coding downstream 116422 45265932 ~ 45277765 (+)
G223644 NA non-coding upstream 7582 45141449 ~ 45141684 (+)
G223643 NA non-coding upstream 10065 45138344 ~ 45139201 (+)
G223642 NA non-coding upstream 14218 45134676 ~ 45135048 (+)
G223640 NA non-coding upstream 21819 45127247 ~ 45127447 (+)
G223637 mypn non-coding upstream 24065 45124879 ~ 45125201 (+)
G223780 NA non-coding downstream 215780 45365290 ~ 45365938 (+)
G223802 NA non-coding downstream 276670 45426180 ~ 45428067 (+)
G223803 NA non-coding downstream 278979 45428489 ~ 45429041 (+)
G223804 lrrfip2 non-coding downstream 281169 45430679 ~ 45439947 (+)
G223855 NA non-coding downstream 398096 45547606 ~ 45550160 (+)
polh polh other upstream 161256 44980402 ~ 44988010 (+)
tmem14a tmem14a,LOC108425445 other upstream 181169 44965696 ~ 44968097 (+)
mcph1 mcph1 other upstream 201920 44896177 ~ 44947346 (+)
mcu mcu other upstream 1380266 43680151 ~ 43769000 (+)
G223335 micu1 other upstream 1533877 43611623 ~ 43615389 (+)
LOC107197130 NA other downstream 22332 45171842 ~ 45184947 (+)
gng4 gng4 other downstream 97860 45247370 ~ 45258924 (+)
arid4b arid4b other downstream 143492 45293002 ~ 45333281 (+)
G223798 NA other downstream 248186 45397696 ~ 45402815 (+)
G223850 NA other downstream 374888 45524398 ~ 45532148 (+)

Expression


Co-expression Network