CI01000009_00729688_00746565 (SYTL5)


Basic Information

Item Value
gene id CI01000009_00729688_00746565
gene name SYTL5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 729369 ~ 747472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00729688_00746565.mRNA
ATTAAACACAAAACAGTATCTAAATGTACGAATTAAAACCAAATTTAATAGAGCACATACAGTATATGTAAAGCAATCCAAACATAATAAATATATATATATATATAATTTATTATGTTTGGATTGCTTTACATATACTGTATGTGCTCTATTAAATTTGGTTTTAATTCGTACATTTAGATACTGTTTTGTGTTTAATGTTTGTTATGAGAGGCATAATCATTATGGTTTTAAAGTGGTCATGTCAAATATTAATCAGTTTTTCCTCCTTGAGGTTATTTGTAAGCCAAGGTGATTTTCTTTTTTTGCTCTGAAAAGAGTAATAATTTCATTATATTTTTCATTATGACTTTCACTCTCTCTCTCTCTGACCCTTACAAACAGACTGATGGAAATATAGAGAACAATCAGTGTTTTTTAACTTAGTTTCAATAGAAGTTTTTTATTATATTTTTTATTTCTGAACGTTGTTGGATGTTTTATATTATATTCAACTCTTTTATTATTTTAAAAGATCAAGAACAATTAAATTTGACTTTAACAGGTCAGAATACATGAATCATGATTCATGATTCACATTTATATTGTAAGTATTACACCTGAAATACCCTGAATAATCACTGATTGTTTTTATATGGATGTTATGCTTTCAGGCATTCAGCAGCTGAAAAGGTTAATGCACTGACCAATAGGATCAGAAGACCTGCCACAATTACTGAGAGATGAATGTTATCGTCTGAAGGAGAGGGCAGATGACCTTTGTTGGGATATATAGATGAACTAAAGCAGTCCTTCATTCATTCATGAGGATTCTAGCTGCATTCATGAAGTATATTTGTGATTGGTTTGTGGCCAGTTTGATTGGCTGAGTTTTCCTTGAGCTCTGTGAGCAGTTCTTTAAATGGTCATGGCGAAGACAACCGAGTCCCTTAATCTGTCCTTCCTCCTGGAGCACGAAAGACAGATGATCCTCAGTGTTCTCCAGAAAGACGAGAAGCTCAGGAAACGAGAGGAGAAACGCATCAGGAAGCTGAAAAATGAACTTCTGGAACTGAAGCGAGCCGGGCGGCGTAGTTCAGCTGATCAGCGTGAGTGTGCCGTATGTCTGCGTGCTCTGGGTCTCATCCTGCAGAGGGGTAATGTGTGTACCAATTGTCATCGGCGCATCTGCAACTTCTGCACTGCTACGCCTCCAGGCAGCAACTGCAAATGCACCGTGTGTGCAAAGACTGCGGAGCTGAAGGTGGTTACAGGAGAATGGTTTCTGGAAGAGAGATCCAAGAGGTTTCAACATGCCAGTGTACCCAGCAGTGATGTAGTCAAACAGTCAATCCTCAGCAGTCCTCCAGATGGAGGCTCTGCTCACAGACCATCAGAGATGGAGAGATCATCCACACCACAGTATGAGAGATCGCCTACTCCTCAATTCCAGAAAGGCGCAGGGAAAAACAGGAAAGGGAAGAGAACGGTTGCAGTGGAACCATCAGGGTTACCAACAGTGCCCAATAACATGAGAACACAAATGGTCAAAACACCAACCCAGACAGAGGCAAGAAACAGGCCGGATGGGGCAGAGAGCGTGTCTAGTATACAAAGCAGTGACAGCGTTTCTGAAAAGATGGCGGATGGGCGGAGACAAATAGATTGCAGCACACCCTCTATTGCCATATCCAGAGCCTCCCTCTCATCAGATCGCAGTCGCTCTGAGGTGGACCTCAGTAATCCTGGAGAGGGCTTCAGTGAAGATCCCCTGATTAGTCGATGCCGCTCAGTTCCAGGACTGAACGATGGGGACTCGGATGAGGACATTGATGCGGTGTTATCAGCACACTATAAAACCAACCGGAGCGTCTGCAGTGCGCAATCAATGTCTTCCACACCTGCCTCGGAGAGAAAGTGGGGTTTCCTTAATGTACCTGACTCAGATGCTGACACTACCAGCATCAACAGTATGATGAGCGTGTACAGTGAGACGGGGGACTATGGCAATGTGCGGGTTTCCGGGGAGATCCTGCTCAACATCTCTTACAGCTATAAAACAGGGGCACTCAACGTGCTCGTCCGCGAGTGCCGCTGCCTAGCAACCGGGGATGAGAGGAGACAGCGCACGGATGCCTATGTTAAAACATATCTTCTGCCAGACAAGTCCCGTCAAAGCAAGCGGAAAACCAGCATCAAAAGCAACACCACTAACCCAGTGTTCAATGAAAATCTGAGGTATGTAGTCAGTCACTCTCAGCTGGAGACTCGCACACTGCAGGTTTCTGTGTGGCATCATGATCGTTTTGGACACAACAACTTCCTGGGGGAGACGGAGCTGACCTTTGACTCCTGGGAGTTTGACACGCAGATAGAGGAGTGGTTCGCTCTACAGCCTAGGAGTGAGTCTTATGTGGACTCAGTGATGCACTATAAAGGGGAACTTACAGTGGTTTTGAAGTACATTCCTGCAGAGAGAAATGTCTCACTGCCTCTGGACCAAGTGCAAGTGAAAAAAGGATTTCTGAAGGGAAAGAAGAAGACCATCACACTTCCTAAAGGAGGAATGGTGGAGCTGCTGGTTAAAGAGGCAAAAAACCTGACGGCCGTCAAAGGAGGGTCCTCTGACCCATTCGTCAAAGGATACCTACTGCCTGATGACAAGAAAAGCACAAAGCACAAGACCGCGGTGGTGAAACGTACCGTAAGCCCACGCTGGAATCACACCTTCACATACTGCGGCCTGCAGCACAGCGATTTGGACAGCGTGTGTCTGGAGCTGACGGTGTGGGACAGAGAACCGCTCGCCAGCAACGTCTTCCTGGGTGGTGTGCGGCTCGGGGCAGGGACAGGTCTGAGTTATGGAAAAGAAGTAGATTGGAACGATTCCTACGGCGAGGAGCAGCGGCTATGGCAACGCATGATTGACAACCCTGAAGTCCCACAAGAGTGCACACTGATGCTGCGATCCAGCATGGCCAAGAGGAAGACATAGAGAGAATGCGGGACAGTTTCCTTGGCAATACGCATCAAATCTGATCACCTCTAGACACTTTAAAGTGCTCTTTATGTTCTTTTGCAGTACTCGCAACTACCCAGATTCTCATTCCAATGTGCACATGCTCTCTAAAACACATCTATGGCATACATATGCACACACATATAGGCCTCTATGGTCCCATTTACACCTGGTATTAACATGTTTCTCAATTGTGATCGCATGGGATTAGCAGGAACTCTAATTTTATGACTACATATATATCACTTATGTCAGTGCGGTACTTCAAGTTGATAAGGAAGGGAAGAGCAAAAAA

Function

symbol description
sytl5 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL5 (synaptotagmin like 5).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0070382 exocytic vesicle cellular_component

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00729688_00746565.mRNA True 3293 mRNA 0.45 16 729369 747472

Neighbor

gene id symbol gene type direction distance location
CI01000009_00698847_00703072 NA coding downstream 26297 698546 ~ 703072 (-)
CI01000009_00694683_00695141 MID1IP1A, MID1IP1 coding downstream 34153 693973 ~ 695216 (-)
CI01000009_00685027_00692267 NA coding downstream 37102 684514 ~ 692267 (-)
CI01000009_00671787_00683080 NA coding downstream 46289 671663 ~ 683080 (-)
CI01000009_00656427_00668116 NA coding downstream 61253 656361 ~ 668116 (-)
CI01000009_00757227_00760184 ASB11 coding upstream 9630 757102 ~ 760184 (-)
CI01000009_00761898_00767155 PIGA coding upstream 14246 761718 ~ 768278 (-)
CI01000009_00812290_00814461 CX50.5 coding upstream 63894 811366 ~ 814575 (-)
CI01000009_00830503_00840457 NA coding upstream 82209 829681 ~ 840961 (-)
CI01000009_00863406_00870786 NA coding upstream 115805 863277 ~ 872274 (-)
G51871 NA non-coding downstream 886 727072 ~ 728483 (-)
G51895 NA non-coding downstream 19729 709034 ~ 709640 (-)
G51893 NA non-coding downstream 21279 707832 ~ 708090 (-)
G51892 NA non-coding downstream 24709 704440 ~ 704660 (-)
G51918 NA non-coding upstream 22358 769830 ~ 770290 (-)
G51920 NA non-coding upstream 24648 772120 ~ 772469 (-)
G51922 NA non-coding upstream 26564 774036 ~ 774327 (-)
G51923 NA non-coding upstream 28812 776284 ~ 776520 (-)
G51901 NA non-coding upstream 31573 779045 ~ 783729 (-)
G52098 NA other upstream 654460 1401932 ~ 1407627 (-)
G52410 NA other upstream 1804252 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 2136216 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 2513731 3261038 ~ 3262843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location