lef1 (lef1)


Basic Information

Item Value
gene id lef1
gene name lef1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6648941 ~ 6728983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229470.3
cacacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATggaaagaagaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCACCACCTCTGACTCCTCCACGACTCCTCGACCCCCCGCTGACCTCTTGGGGGGGCTCCACCTCTCAGCGTGCTCCTCTGCTGTAGAGACACTGAACTGAAAACAGACAA
>XM_007229473.3
acacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATggaaagaagaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCACCACCTCTGACTCCTCCACGACTCCTCGACCCCCCGCTGACCTCTTGGGGGGGCTCCACCTCTCAGCGTGCTCCTCTGCTGTAGAGACACTGAACTGAAAACAGACAATCACTACTCGCCAAGACACCGGCACACACTtacccatacacacactacacgtgc
>XM_007229474.3
acacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATaagaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCAC
>XM_015604655.2
acacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGTACAGCCCAGAGAATGAAAACGGCGTACATCTGAGCAATGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCAC
>XM_022684507.1
cacacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATaagaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCACCACCTCTGACTCCTCCACGACTCCTCGACCCCCCGCTGACCTCTTGGGGGGGCTCCACCTCTCAGCGTGCTCCTCTGCTGTAGAGACACTGAACTGAAAACAGACAA
>XM_022684508.1
cacacattcacacactctctcagtcAGTCAGGCAGGCAGTCAGAGGGTCTGCAGCTCGCGAGGAGCGTCGAGGCTCCGCTTTGGACGTTCTGACGCTTCGGCGCAAcgactttttttaaaacactttgttCGAGTTTTTTGGGCAGAAAATCTTCGCTTTTCTTCGCATGGAGCTTTTCTGAGACTGAAGCGCAACTAGAAACAAAGTTACAGATTTTTTGTTCACAGTTTTTCACAGAGTTTTTGCGGcttgtgtcagtgtttttgtttgttgttgtgcgGTTTTGGCGTTCAATCAGTGCGATTAATCgaattgattgattgagtgggtgtttgtttttttctgtctgagGAGGAAATATACACACGTCGGGAGCTGTGCTGGCTGTGTGTTAGTAGCCTGGAGAAgaaagaagtgtgtgtgagtgtgagacagAGTGTGTGAAAAGTCTGAACTCTTTGaagttctttttatttcttaaaaaaaaaaaacagagagagagagcgagattgAGACATTGTATCTCAATATTTCCTCCTCAAACTCAGGGCTttgtcccacacacacattttgatcacacacacaaacacacacacaccttgggTTCTCCTCCTGTTGCTGCTCCCCGCACGCGCTTCCTTCCCACGTGAAGTTTTCACACAAGTTtattctgtgatttttttattattttttctgaggggatttttttttgggggggacgtTAGCGTGTTATCATGCCCCAGCTagctggaggtggaggtggcGGCGGAGGTGGAGATCCAGAGCTTTGCGCCACAGATGAAATGATTCCCTTCAAGGACGAAGGAGACCCGCAGAAAGAGCAGATCTTTGCAGAGATCAGCCACTCGGAGGAGGAAGGAGATTTAGCCGAGATCAAATCTTCTCTGGTTAACGAAACGGAGGACAGTCCCAACAGCACCGGCCACGATgGAGTTAGACAGTCCCAAATAACTCCAGATTCCTACCacgaaaaacacagagaacatcCAGATGATGGAAAGCTTCAGGACCTGTACAGCAAAGGGCATCCATACCCCAGTTACCCCAGTTACATCATGATGACCAACATGAACAACGAACCCTACATGAACAACGGCTCGCTGTCGCCGCCCATGCCCAGAACGTCAAATAAAGTTCCTGTGGTGCAGCCGTCCCATGCAGTTCACCCCCTCACACCCCTGATCACCTACAGTGACGAGCACTTCGCCCCGGGCCCACACTCCGGACACCACCCGCATGACCTCAACTCCAAACAAGgTATGCCTAGGCATCATTCTGGTCCAGATATTCCAAacttctactctctctctcccggaGGAGTTGGACAGATCACTCCACCACTGGGCTGGTTCTCTCATCACATGGTTCCAGGACCTCCTGGACCTCATGCCACAGGTATCCCCCATCCTGCCATCGTCAACCCGCAGGTCAAGCATGAACCTCCCCACGAGACTGACCTGATGCACATGAAGTCTCAGCACGAGCAGAGAAAGGAGCAGGAGCCCAAGAGGCCCCACATTAAGAAGCCACTCAACGCCTTCATGCTCTATATGAAAGAGATGAGAGCCAATGTGGTGGCCGAGTGCACGCTGAAGGAGAGCGCCGCCATCAACCAGATCCTGGGCAGGAGGTGGCATGCTTTATCTCGGGAAGAGCAAGCTAAGTATTATGAATTAGCCCGCAAGGAACGGCAGCTCCACATGCAGTTATACCCAGGCTGGTCTGCCAGAGACAATTATaagaagcggAAGAGGGAGAAGCTCCAGGAGACTGCCCCAGGAGGAAAACGCACCACTTTCTCCTCGTGTAAAGCAAAGGCAGCAGCTACGGGGCCCCTTTTGGAGATGGAAGCCTGCTAGACTCCACCACCTCTGACTCCTCCACGACTCCTCGACCCCCCGCTGACCTCTTGGGGGGGCTCCACCTCTCAGCGTGCTCCTCTGCTGTAGAGACACTGAACTGAAAACAGACAA

Function

symbol description
lef1 Enables sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; fin development; and fin regeneration. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Is expressed in several structures, including midbrain hindbrain boundary neural rod; nervous system; neural crest; pleuroperitoneal region; and trunk. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human LEF1 (lymphoid enhancer binding factor 1).

NR:

description
lymphoid enhancer-binding factor 1 isoform X3

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0048747 muscle fiber development biological_process
GO:0021542 dentate gyrus development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0042100 B cell proliferation biological_process
GO:0061153 trachea gland development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0071864 positive regulation of cell proliferation in bone marrow biological_process
GO:0071866 negative regulation of apoptotic process in bone marrow cell biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0021861 forebrain radial glial cell differentiation biological_process
GO:0021873 forebrain neuroblast division biological_process
GO:0071895 odontoblast differentiation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0046632 alpha-beta T cell differentiation biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0032696 negative regulation of interleukin-13 production biological_process
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0032713 negative regulation of interleukin-4 production biological_process
GO:0032714 negative regulation of interleukin-5 production biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0031101 fin regeneration biological_process
GO:0021943 formation of radial glial scaffolds biological_process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0060784 regulation of cell proliferation involved in tissue homeostasis biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0030879 mammary gland development biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0048069 eye pigmentation biological_process
GO:0033334 fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0033336 caudal fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0060561 apoptotic process involved in morphogenesis biological_process
GO:0060325 face morphogenesis biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008013 beta-catenin binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0045295 gamma-catenin binding molecular_function
GO:0030331 estrogen receptor binding molecular_function

KEGG:

id description
K04492 LEF1; lymphoid enhancer-binding factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229470.3 False 2004 mRNA 0.51 10 6648941 6728929
XM_007229473.3 True 2098 mRNA 0.51 11 6648942 6728983
XM_007229474.3 False 1931 mRNA 0.50 11 6648942 6728822
XM_015604655.2 False 1928 mRNA 0.50 11 6648942 6728822
XM_022684507.1 False 1998 mRNA 0.51 10 6648941 6728929
XM_022684508.1 False 1995 mRNA 0.51 10 6648941 6728929

Neighbor

gene id symbol gene type direction distance location
trnam-cau_43 NA coding upstream 167312 6481558 ~ 6481629 (+)
LOC103036066 NA coding upstream 190620 6454447 ~ 6458321 (+)
LOC103035747 NA coding upstream 200775 6435721 ~ 6448166 (+)
LOC103042697 NA coding upstream 215813 6428242 ~ 6433128 (+)
LOC103036371 NA coding upstream 233323 6411469 ~ 6415618 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding downstream 56607 6785590 ~ 6993387 (+)
npnt npnt,LOC107729354,LOC107675850 coding downstream 283536 7012519 ~ 7142268 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding downstream 544222 7273205 ~ 7301823 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding downstream 737194 7466177 ~ 7481674 (+)
LOC103045679 NA coding downstream 800597 7529580 ~ 7549205 (+)
G214290 NA non-coding upstream 16567 6632065 ~ 6632374 (+)
G214283 NA non-coding upstream 67208 6581294 ~ 6581733 (+)
G214215 NA non-coding upstream 175197 6380944 ~ 6473744 (+)
G214227 NA non-coding upstream 178741 6469473 ~ 6470200 (+)
G214174 NA non-coding upstream 373018 6275714 ~ 6275923 (+)
G214304 NA non-coding downstream 27422 6756405 ~ 6756758 (+)
G214313 NA non-coding downstream 27989 6756972 ~ 6759193 (+)
G214340 NA non-coding downstream 139734 6868717 ~ 6869146 (+)
LOC111195949 NA non-coding downstream 204972 6933955 ~ 6939059 (+)
G214362 NA non-coding downstream 280889 7009872 ~ 7010111 (+)
LOC111196031 NA other upstream 239873 6399076 ~ 6409068 (+)
G214175 NA other upstream 364573 6283781 ~ 6284368 (+)
G214006 NA other upstream 1127266 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1289209 5349167 ~ 5359732 (+)
G213891 NA other upstream 1474845 5173069 ~ 5174096 (+)
pold4 NA other downstream 1081995 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1127179 7856162 ~ 7877118 (+)
G214773 NA other downstream 1381965 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2229316 8958299 ~ 9030598 (+)
sprn sprn other downstream 3846512 10575495 ~ 10583088 (+)

Expression


Co-expression Network