LOC103036066


Basic Information

Item Value
gene id LOC103036066
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6454447 ~ 6458321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229479.3
TTGTACTTGGTAACTCCGCCCAGTGGTGTGTTTGCTTCCTTCTGCTTCTGTTTCGCTGGAGTTTAGAGACACATTCAGCTACAATGGCGAGCAGAAAGGAATCACCAGCCAAAACAGGTCTGCTTGGGGAGTACAGGATGAACAACAAGCAGCGAGGATTGGCCCTTATCTTCAACCAGAAACATTTTCAACAAGAGTTACGTCTGAGAGAACGTGATGGAAATGATGCAGACAAGACTAACCTCACTGAAAGATTTCAGGAGCTCGGATTTGAGGTGCAATCTTATGATAATTTAGATGAGAAAAATATGATGGACAGCATACAGAAAGCGGCAAAGCGTGACCACAAAGATGCCGactgctttgtgtgtgttttcttgaGTCATGGAGATGAGGATCATATTTTTGCCAATGACAAAAAGgttaatataaagaaaataacagaTCTCTTCAGAGGGAATGAATGTGAAAGCCTTGTAGGAAAACCCAAGATCTTCATCATCCAGGCAAGCCAAGGCAAAATTGCTGAAGAGGCTGTGACTGGGATGGCTGCAGATGATGATGAGATCACTACTTATTTCATCCCAGCTGGAGCAGATTTCCTCATTTGCTGCAGTGTTGCTGAGGTGGACTGCAATTTCTTCATTCAGGATCTGTGTGAGACACTGAAACACCAAGGCTCAACTCTGGAGTTCACCAAGCTGCTGACCCTGGTCAACATGAAGGTGTCCACACGTACCCAGAGTAGCAATAAGCAGATGCCCTGCTTCACCTCCATGCTTACCAAGAAACTCTACTTCAGACCCAAAGAGGAGCAAACGTCGACACCTTCTGGATCTTCATCCATTCAGagctgaataaatatatattttaccacTGTATTCAAGCCCAGGTCAGCCTCAGACCCCACAAAGTAGAATAAAGTTGCCAGATACTTTTATTTCTCACTGATTAAGTCATCATTATTAGAGACACAattcgattttttttatttacagcatcCATGGGGTAATTAGAATTAAATGAATGAACCCagcaaataacacatttattaagacttaaaaaatagttttttaagtaatggggctCTGTTGTGGATCTATTAATACAGGACAAAGCTACTACAGGAAAACCTATTCTGTTttcttgcattttatttttatgtcactatgtaattttatttattctgtacaTTGTACTTATGTAATACGATGTAAATAATGCAAGTTAtagctgaacaaaaaaaaagaaactatatTGTAATTATGGTTTAAAGCTGAATAAAAATCAAGTGTTAAAAATG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050661 NADP binding molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229479.3 True 1303 mRNA 0.39 6 6454447 6458321

Neighbor

gene id symbol gene type direction distance location
LOC103035747 NA coding upstream 6281 6435721 ~ 6448166 (+)
LOC103042697 NA coding upstream 21319 6428242 ~ 6433128 (+)
LOC103036371 NA coding upstream 38829 6411469 ~ 6415618 (+)
LOC103036975 NA coding upstream 55966 6387504 ~ 6398481 (+)
trnak-cuu_9 NA coding upstream 128390 6325985 ~ 6326057 (+)
trnam-cau_43 NA coding downstream 23237 6481558 ~ 6481629 (+)
lef1 lef1 coding downstream 190620 6648941 ~ 6728983 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding downstream 327269 6785590 ~ 6993387 (+)
npnt npnt,LOC107729354,LOC107675850 coding downstream 554198 7012519 ~ 7142268 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding downstream 814884 7273205 ~ 7301823 (+)
G214174 NA non-coding upstream 178524 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 218727 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 341437 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 366850 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 367946 6086241 ~ 6086501 (+)
G214227 NA non-coding downstream 11152 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 122973 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 173744 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 206890 6665211 ~ 6698418 (+)
G214304 NA non-coding downstream 298084 6756405 ~ 6756758 (+)
LOC111196031 NA other upstream 45379 6399076 ~ 6409068 (+)
G214175 NA other upstream 170079 6283781 ~ 6284368 (+)
G214006 NA other upstream 932772 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1094715 5349167 ~ 5359732 (+)
G213891 NA other upstream 1280351 5173069 ~ 5174096 (+)
pold4 NA other downstream 1352657 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1397841 7856162 ~ 7877118 (+)
G214773 NA other downstream 1652627 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2499978 8958299 ~ 9030598 (+)
sprn sprn other downstream 4117174 10575495 ~ 10583088 (+)

Expression


Co-expression Network