LOC103038786 (LOC103368813)


Basic Information

Item Value
gene id LOC103038786
gene name LOC103368813
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6314852 ~ 6324230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229486.3
CCTACGTCACTACTCCGGGACAACCGGAAGTGCTCGTGAAATCAGCAGCACACAGCAACAATACGGCTCCTCTGTTTCTGATCTTTCCTCTCCGTTAAACCCGGTAAACCCCGGTAAAAGCCGTTACTCCGGTACTTTACTCCGGTGTTTCCTCTCCCCCGGTTCTTCTGGTGTCTCCCTGCGGGCCCGGGAGCGCTGATCACCCCGCGGGCAGCaggtcagcagcagcagcagcggctccACGGGCGCGATGTCGAACCGCCTCGCCTTCCAGACGCAGCTCGCCTCCATCATGGAGGTCCTGGCGAACGCGGCGGTGGCGGAGATCTGTAAGCTGGTGGATGATGATTACGCGGTGATGACCCTGCAGATGTCTCAGTGCCAGCGGGAGAACAAGGCGCTGAAGCGGAAGCTGCATCTGCTGGAGCTGCGGATGGCCCGCGGGTTCGCGGAGCGGCGGATCCGGGAGAGCTCGCTGAACCGCTCCAGCCGAGTGCAGGTCACCGCCAGCCTGCCGGACAAATACCGGGACTTCAGCCGGGGTCCAGCGGGCGGTATCTTTCCAGGTCGAGATCAGCTCTATGGGCGGCAGCTGAACGAGGATCtctggagagagagggaacctCCTGCTACAGATGTGGCAATCGATCGTCCAGTCCATAAGGACACAGAGACTGTGACTGAAGATAATGGGCCAGAAGCTGTTCTGGTGAAGGCTGAGACATCTGATGAAGGCAATAAGCAACCAGAGCTGTTCATCAGAGAAGACGGAGTGGCAGAGCCTATACCTGAGGGTGGGGAGGCAGGTTACGGTGCTGCTCAGCTGGAAAAAGCAGACGGTCACCACTCCAGGACACGCCGGCAGGCTTTGGAGCCTCAGAAGACAGAGGATGAGGAGCCAGATGTGCTGTTCATCAAAGAGGAGCATTCAGAGCAGGAGAGAAGAGACAGCCAGACACATGGAGGCATGAGCGTACAAGATGGTTTTGTGGAGTCCAGCACTGATATTTGTAGAAGCGGCACATCTTCTTCACCTGCACAGATTACAATAGCGCTGGGAGCTGAGGAGTCTGAAGAATTGGATTCATCTCTTATAAAGGAATCCTCAGCAGAACAGGAAAAGAAGACTGTCTCCAATCAGTCTGCAGGAGTTCAGATTTCCATACAGAATGTAGTAGGTGCTCAGACTGCTGCCTCTCTACATTCTCGTGATCCTGCTCTTCCACACAGAGGAgcaggaacagcagcagcacaaccCATAGGGGTCAAAACATGGGATCTCCCCAGCACTCAGGAGTCTCAGCTCCAGGTTGGAGGGGAGAGCATCTCCAACCCACTTTCTAACCAGAGCACCCAGAGACGAAAAATGGCCATGTCTGCTGATTTTCTGGGGGCGAACAATACCCTGTTTGAGAGACCAGGAGAGGTGGAGGCACTGTTTACTCGATGGACTGCAAACAATTCCTCTGCCAGCCAGCCGTCTTGTTCTTATGTTGTGGACgcagaccaagaccaggactgTGTGCTGGTCCAGCCAGCGGCTCTGTCTGGCATAGATGGAGGGTCTTCTAACAGGCTTCAGGAAGCCAGAGGGCCTATTGCAGTAGACGAGGAGTGGACCACAGCTGCTATTTCACAGCAAACTCAACAGCTGAGTCATTATAGCAGGACAGATGGGGTCCGATTAGAGCAATCGAACAGAGTAAATGTTTCTCAGACTGTTTCGAAGGTCACTATGAACTCTCAAATGCTGACGAGTTTCTCCCAGGCTGGGTATTCTCTCGCTGGGCTGCAGATGCCCAAGCGCCTGGAGAAGGGTAAGAGGAAGAGCTACATCTGTAAGTACTGTGGAAAGGCTTTCACTGGGCTGTCCAATGTGGAGGCTCATCAGAGGGTCCACACAGGAGAGAAGCCTTTTAAATGTGAGACATGCGGGAAGCTTTTTGCAGAGGCAGGAAACCTGAAAAAGCACCAGAGGGTTCACACAGGGGAGAAACCGTTCACGTGTACCCGCTGTGGCAAACGCTTTGCCTGGATCTGCAACCTCAGGACTCACCAACAGTCGGCTTCCTGTGGAGGAGTTTGAAGCCAAAATGTGGttaaattattgaattattggAGTTTGTAGTGTCTTCTTTTTTACTATGTCCGATTTAAATATATGTAGTTTGTAGAAATTTCCTAAATTTTGAGAAAAGTAAGAAGTAGAATACATTGGATTCAGACGTGCTGATAGAAAATGACTGTGCTTGACTTACTCAGTGTGTTGACCAGTTTAGAGTCTAGCTGTTTTAAAAGTAACATGGTGCTTCTCTAAATGTTAAGTTGGTGCCTTATATTTTAATTACCCCTACCTTTTATTAACACTGTCCAACAATGAACAACCCTTTCACAACTCTCTACCGAACACTTACCTCACTGACCGCTCCACTGGCCCTGAACTTCAACTGTGAACCTGTCAAGTCTCAGAAATAACTAACTATTTCGTTCTACCTCCTGATCTTTTTTtgtagacaaacaaacaaagcaatATGTGAAAGAAAAGCCAGACTGTTCAGTTTTCATAATCACAAACAATTATATAACAGTGTTAGAAAATCATGTCTGTTTAAACAAGGCTACAATTTTCAGCAACAATACTATAAAGGAGGACAGCAATGTATCAGTTACTGCAAATGTACATTTCCTCAGagtaaaaagtgaaaagaaaatcTATTATGTTCATCTGTTA
>XM_015604677.2
CCTACGTCACTACTCCGGGACAACCGGAAGTGCTCGTGAAATCAGCAGCACACAGCAACAATACGGCTCCTCTGTTTCTGATCTTTCCTCTCCGTTAAACCCGGTAAACCCCGGTAAAAGCCGTTACTCCGGTACTTTACTCCGGTGTTTCCTCTCCCCCGGTTCTTCTGGTGTCTCCCTGCGGGCCCGGGAGCGCTGATCACCCCGCGGGCAGCaggtcagcagcagcagcagcggctccACGGGCGCGATGTCGAACCGCCTCGCCTTCCAGACGCAGCTCGCCTCCATCATGGAGGTCCTGGCGAACGCGGCGGTGGCGGAGATCTGTAAGCTGGTGGATGATGATTACGCGGTGATGACCCTGCAGATGTCTCAGTGCCAGCGGGAGAACAAGGCGCTGAAGCGGAAGCTGCATCTGCTGGAGCTGCGGATGGCCCGCGGGTTCGCGGAGCGGCGGATCCGGGAGAGCTCGCTGAACCGCTCCAGCCGAGTGCAGGTCACCGCCAGCCTGCCGGACAAATACCGGGACTTCAGCCGGGGTCCAGCGGGCGGTATCTTTCCAGGTCGAGATCAGCTCTATGGGCGGCAGCTGAACGAGGATCtctggagagagagggaacctCCTGCTACAGATGTGGCAATCGATCGTCCAGTCCATAAGGACACAGAGACTGTGACTGAAGATAATGGGCCAGAAGCTGTTCTGGTGAAGGCTGAGACATCTGATGAAGGCAATAAGCAACCAGAGCTGTTCATCAGAGAAGACGGAGTGGCAGAGCCTATACCTGAGGGTGGGGAGGCAGGTTACGGTGCTGCTCAGCTGGAAAAAGCAGACGGTCACCACTCCAGGACACGCCGGCAGGCTTTGGAGCCTCAGAAGACAGAGGATGAGGAGCCAGATGTGCTGTTCATCAAAGAGGAGCATTCAGAGCAGGAGAGAAGAGACAGCCAGACACATGGAGGCATGAGCGTACAAGATGGTTTTGTGGAGTCCAGCACTGATATTTGTAGAAGCGGCACATCTTCTTCACCTGCACAGATTACAATAGCGCTGGGAGCTGAGGAGGAATCCTCAGCAGAACAGGAAAAGAAGACTGTCTCCAATCAGTCTGCAGGAGTTCAGATTTCCATACAGAATGTAGTAGGTGCTCAGACTGCTGCCTCTCTACATTCTCGTGATCCTGCTCTTCCACACAGAGGAgcaggaacagcagcagcacaaccCATAGGGGTCAAAACATGGGATCTCCCCAGCACTCAGGAGTCTCAGCTCCAGGTTGGAGGGGAGAGCATCTCCAACCCACTTTCTAACCAGAGCACCCAGAGACGAAAAATGGCCATGTCTGCTGATTTTCTGGGGGCGAACAATACCCTGTTTGAGAGACCAGGAGAGGTGGAGGCACTGTTTACTCGATGGACTGCAAACAATTCCTCTGCCAGCCAGCCGTCTTGTTCTTATGTTGTGGACgcagaccaagaccaggactgTGTGCTGGTCCAGCCAGCGGCTCTGTCTGGCATAGATGGAGGGTCTTCTAACAGGCTTCAGGAAGCCAGAGGGCCTATTGCAGTAGACGAGGAGTGGACCACAGCTGCTATTTCACAGCAAACTCAACAGCTGAGTCATTATAGCAGGACAGATGGGGTCCGATTAGAGCAATCGAACAGAGTAAATGTTTCTCAGACTGTTTCGAAGGTCACTATGAACTCTCAAATGCTGACGAGTTTCTCCCAGGCTGGGTATTCTCTCGCTGGGCTGCAGATGCCCAAGCGCCTGGAGAAGGGTAAGAGGAAGAGCTACATCTGTAAGTACTGTGGAAAGGCTTTCACTGGGCTGTCCAATGTGGAGGCTCATCAGAGGGTCCACACAGGAGAGAAGCCTTTTAAATGTGAGACATGCGGGAAGCTTTTTGCAGAGGCAGGAAACCTGAAAAAGCACCAGAGGGTTCACACAGGGGAGAAACCGTTCACGTGTACCCGCTGTGGCAAACGCTTTGCCTGGATCTGCAACCTCAGGACTCACCAACAGTCGGCTTCCTGTGGAGGAGTTTGAAGCCAAAATGTGGttaaattattgaattattggAGTTTGTAGTGTCTTCTTTTTTACTATGTCCGATTTAAATATATGTAGTTTGTAGAAATTTCCTAAATTTTGAGAAAAGTAAGAAGTAGAATACATTGGATTCAGACGTGCTGATAGAAAATGACTGTGCTTGACTTACTCAGTGTGTTGACCAGTTTAGAGTCTAGCTGTTTTAAAAGTAACATGGTGCTTCTCTAAATGTTAAGTTGGTGCCTTATATTTTAATTACCCCTACCTTTTATTAACACTGTCCAACAATGAACAACCCTTTCACAACTCTCTACCGAACACTTACCTCACTGACCGCTCCACTGGCCCTGAACTTCAACTGTGAACCTGTCAAGTCTCAGAAATAACTAACTATTTCGTTCTACCTCCTGATCTTTTTTtgtagacaaacaaacaaagcaatATGTGAAAGAAAAGCCAGACTGTTCAGTTTTCATAATCACAAACAATTATATAACAGTGTTAGAAAATCATGTCTGTTTAAACAAGGCTACAATTTTCAGCAACAATACTATAAAGGAGGACAGCAATGTATCAGTTACTGCAAATGTACATTTCCTCAGagtaaaaagtgaaaagaaaatcTATTATGTTCATCTGTTA

Function

NR:

description
PREDICTED: zinc finger protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229486.3 True 2731 mRNA 0.50 8 6314852 6324230
XM_015604677.2 False 2701 mRNA 0.50 8 6314852 6324230

Neighbor

gene id symbol gene type direction distance location
LOC103039100 NA coding upstream 2245 6302716 ~ 6312607 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding upstream 15301 6293110 ~ 6299551 (+)
LOC111195932 NA coding upstream 130676 6180250 ~ 6184176 (+)
LOC103039918 NA coding upstream 155207 6150688 ~ 6159645 (+)
LOC111195931 NA coding upstream 204586 6104774 ~ 6110266 (+)
trnak-cuu_9 NA coding downstream 1755 6325985 ~ 6326057 (+)
LOC103036975 NA coding downstream 63274 6387504 ~ 6398481 (+)
LOC103036371 NA coding downstream 87239 6411469 ~ 6415618 (+)
LOC103042697 NA coding downstream 104012 6428242 ~ 6433128 (+)
LOC103035747 NA coding downstream 111491 6435721 ~ 6448166 (+)
G214174 NA non-coding upstream 38929 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 79132 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 201842 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 227255 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 228351 6086241 ~ 6086501 (+)
G214215 NA non-coding downstream 56714 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 145243 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 257064 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 307835 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 340981 6665211 ~ 6698418 (+)
G214175 NA other upstream 30484 6283781 ~ 6284368 (+)
G214006 NA other upstream 793177 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 955120 5349167 ~ 5359732 (+)
G213891 NA other upstream 1140756 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1724400 4510939 ~ 4590452 (+)
LOC111196031 NA other downstream 74846 6399076 ~ 6409068 (+)
pold4 NA other downstream 1486748 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1531932 7856162 ~ 7877118 (+)
G214773 NA other downstream 1786718 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2634069 8958299 ~ 9030598 (+)

Expression


Co-expression Network