LOC103039100


Basic Information

Item Value
gene id LOC103039100
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6302716 ~ 6312607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229487.3
GCTGAGTCAGTTTTAAATTCTCGGGCTTCAGTACAGACCAGCTAGACGTTTTAAAGAATCCACAGAATAAGAAGTTGATCAGCTTGGATCTAGTGGAATGGACACCTTTATGAAACGAGGAGAAGTTTATCTGCAACATCATAAACACTCTGAGAAGTGGAAGCGGTACTGGCTGAATCTTTACCCAGGCAGCCGAAATGGCGTAGCTCGGCTGGAGCTTACAGAAACCAGCTCAGATCGGTCACCGGCGATGGTTCGAAGGCAACCTGATCGCAAAGTGATCAGATTATCTGAGTGCATCAGTGTGGTAAGACTGCCCCCACATGCAGAGGCCCACCCTGGAGACAACATGGCCGCCTTCTGTGTCCAGACAGATGACAAGAGGATGGTGTTTGCAGTGGAGAAAGAACGATGTGGAGAGTGGGTGGAGAAGATCTGTGACATTGCCTTTCAGAAGGGAAGCAGCAGCATTCCACGGCAGGTTCCACAAATGGAGGAGAATCAGATCTATGCTTCCAGAGAAGAAGTGTTCGACTTCTGGGTGACTCTGCAGCAGTCTGAGGCGGCGGTGCGTTGTGGACTGCAGGGGGCGTACTGGCTGCAGACTGGTGAAGAGTCTCTGATAATCCAGGATACTGAGAGTCGGCAACGTGTAATAGAATGGCCATATAAGCTACTGCGCCGTTACGGTGGAGACAAGACTGTGTTCTCAATTGAAGCAGGCAGACGCTGTGAAAGTGGCCCTGGCACCTTTGTCTTTGAAACCAAGCAAAGTGAAGAGATTCTCCGCCGGGTGGAGCAGGCCATTCAGCAGCAGAAAACCCTGAGTGTCTCTGCAGGCAGCTGCTCTCCTCGATCTCCTTGCTCACCCTTGCCCAGACGACCCATCAGTGCCTCCCTCCTCGACACTCTGGCCAACAGCTCTGGACTCAGCAGCTCTGAATCCAGTGCAAACAATGATGGTCCTGGTGGCTTAGCTGATTCAGCATTCGTCAAAGCTGCAACTGGAACATCAAAGACTAATCCCAGACTTCCCGGTGAATCCACCGGCATGCCTGAACCCATATATTCAACTCCCATTGATGATATTGCATTCAGATTGCAACAGCCCACAGTTAAAAACGGAAGGCCTATTCATCACCCCTACGAGTACACAGAACCTGTGTATTCTGACCCTGCTGACGTCATCCGGCCCAACCCTAACGCACGCATGTGTGCCTGGTCTAATACCACTGACACAGTCTCAGTCCCCGTCCCCCTGGAATCATCTCACCATAGCCCTCAGCCTGACCCACTGTACTCTGAGGTGCTTCACATCATGCCAAACCCAGCGCAGCAACCAGTAAGCCAGGCTCAAAATAAAGAAGAACCAATCTACAGTTTACCCATTCATAATACAGTGCATAAGTCATGTGAGGATGTTCAAACTGCCTCAGAAAGCAAGTCGGACATGGAAAACAGAAAGGTGGATGAGATCACTGCTATTTACAGTCAAGTCAACAAAGCAGCTAAAACCAAAAAACCCAAAGACAAGACTGAATCTCAAAGAGTGCCAGATGTTGTCTCTGAACCACTTGGTTGGATTTAAAAGGACATTAAGATGTTTCTAAgttatgtatcatttttgtataggtaataagaaataataaagcttgctagctccaaaaatatataatttcaagGTACTGATATTGTATTTGATGCTCTTTCTCTTACAGACCCGCAGAAATAAACATGTCTGCTCCTGCCTTTtcactaaattattaaatatactgAATTTAAACTAAA

Function

GO: NA

KEGG:

id description
K20234 DOK2; docking protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229487.3 True 1788 mRNA 0.47 5 6302716 6312607

Neighbor

gene id symbol gene type direction distance location
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding upstream 3165 6293110 ~ 6299551 (+)
LOC111195932 NA coding upstream 118540 6180250 ~ 6184176 (+)
LOC103039918 NA coding upstream 143071 6150688 ~ 6159645 (+)
LOC111195931 NA coding upstream 192450 6104774 ~ 6110266 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 598867 5689706 ~ 5703849 (+)
LOC103038786 LOC103368813 coding downstream 2245 6314852 ~ 6324230 (+)
trnak-cuu_9 NA coding downstream 13378 6325985 ~ 6326057 (+)
LOC103036975 NA coding downstream 74897 6387504 ~ 6398481 (+)
LOC103036371 NA coding downstream 98862 6411469 ~ 6415618 (+)
LOC103042697 NA coding downstream 115635 6428242 ~ 6433128 (+)
G214174 NA non-coding upstream 26793 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 66996 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 189706 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 215119 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 216215 6086241 ~ 6086501 (+)
G214215 NA non-coding downstream 68337 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 156866 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 268687 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 319458 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 352604 6665211 ~ 6698418 (+)
G214175 NA other upstream 18348 6283781 ~ 6284368 (+)
G214006 NA other upstream 781041 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 942984 5349167 ~ 5359732 (+)
G213891 NA other upstream 1128620 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1712264 4510939 ~ 4590452 (+)
LOC111196031 NA other downstream 86469 6399076 ~ 6409068 (+)
pold4 NA other downstream 1498371 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1543555 7856162 ~ 7877118 (+)
G214773 NA other downstream 1798341 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2645692 8958299 ~ 9030598 (+)

Expression


Co-expression Network