LOC103039606 (paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126)


Basic Information

Item Value
gene id LOC103039606
gene name paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6293110 ~ 6299551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229489.3
TGTTTGTTTGAAAGGCCCGCACATGAACGCATTGACGTAGTATTGAAATCTGGCCAGGTAACAGTGTTGCTGCGAACAGGCCGAATTCCCTCCGTTTAGCTGGAGCTCTGTTGGGATTATAGAGGAGAACGGTGTGGTTACGATGCCTGAACCTGCAGATATTAACAGTCCCGAGGTGGCGaagacaccaggaggcagcacTGGTTCGGGGAAGGATGACGTTGTGGTGAACGGACATAAGGAAGGAGAGTCCAACCCCTTTGCAGAGTACATGTGGATGGAGAACGAGGAAGAGTACAACAGACAGGTGGAAGAGGAGCTTTTGGAGCAGGAGTTTCTGGAGCGCTGTTTCCAGGAAATGTTAGAAGAGGAGGATCAGGACTGGTTCATTCCTGCGAGGGACCTGCCGCCTGGTGTCGGGCAaattcagcagcagctcagtggGCTGTCGGTCAATGACGGAAACGCAGAAGACATTGCACGCAAGAGCAATTTGAACCCAGATGCGAAGGAGTTTGTGCCGGGAGTGAAATACTAGGGATCTACCAAATATGGGCTCCCTTATAGAGACTCTATGTGACCTGCTGATGGTCAGCGGTCACCCCCGCTCACGTCTCACTTAAAAGTGGGAGGTGTGTGGGGCTGGTGGGGTTGGGTTcctgggtggggtgggggtggggggtgttggATGCTCTTCtataagctttttattttcgtctgtctccatatgtaACCTGGGTGCAGGGGTGGGCAGGGTATTCAGTGTAAAGCTGCCATTGGACCGCTTCAGAGTGTGACTAGCTATCCAGGAAGTTGTCTGTGTATTCAATCTGAGAGGCAATGTCTGTCTCCACTATTGTGATAGTGACTAGCAGTTTGTTCCTGGACATTGTTAtaatttcctttctttttttcgctttttcttttgtttccctTTTTGAAGGGAGTTTAGCAGGGAGAAAACGTGTCGAAGGGGAGGGGAAAAGGGGGCGGGATGGGGGGTGAAGAGAGATTGATGCAGCTGATCTTTGGCAGGTGGACCAGTACCAGATGTTTTTGAGATGATGGCAGTTGATTACTTGTGAGGGATttccacacacttttttttttttctcagttgaAGTCCTGTCACTGTGCGACTTGCAttaacaaaaatgaagaaaaaaagtatattgaaATAAAAAGAGCAGGTTCCCTCTTTGA

Function

symbol description
paip2b Predicted to enable translation repressor activity. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within negative regulation of translational initiation. Predicted to be active in cytoplasm. Orthologous to human PAIP2B (poly(A) binding protein interacting protein 2B).

NR:

description
polyadenylate-binding protein-interacting protein 2B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229489.3 True 1203 mRNA 0.49 4 6293110 6299551

Neighbor

gene id symbol gene type direction distance location
LOC111195932 NA coding upstream 108934 6180250 ~ 6184176 (+)
LOC103039918 NA coding upstream 133465 6150688 ~ 6159645 (+)
LOC111195931 NA coding upstream 182844 6104774 ~ 6110266 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 589261 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 832606 5459757 ~ 5460504 (+)
LOC103039100 NA coding downstream 3165 6302716 ~ 6312607 (+)
LOC103038786 LOC103368813 coding downstream 15301 6314852 ~ 6324230 (+)
trnak-cuu_9 NA coding downstream 26434 6325985 ~ 6326057 (+)
LOC103036975 NA coding downstream 87953 6387504 ~ 6398481 (+)
LOC103036371 NA coding downstream 111918 6411469 ~ 6415618 (+)
G214174 NA non-coding upstream 17187 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 57390 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 180100 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 205513 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 206609 6086241 ~ 6086501 (+)
G214215 NA non-coding downstream 81393 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 169922 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 281743 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 332514 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 365660 6665211 ~ 6698418 (+)
G214175 NA other upstream 8742 6283781 ~ 6284368 (+)
G214006 NA other upstream 771435 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 933378 5349167 ~ 5359732 (+)
G213891 NA other upstream 1119014 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1702658 4510939 ~ 4590452 (+)
LOC111196031 NA other downstream 99525 6399076 ~ 6409068 (+)
pold4 NA other downstream 1511427 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1556611 7856162 ~ 7877118 (+)
G214773 NA other downstream 1811397 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2658748 8958299 ~ 9030598 (+)

Expression


Co-expression Network