LOC103042087 (rpia,LOC107671341,LOC107695020)


Basic Information

Item Value
gene id LOC103042087
gene name rpia,LOC107671341,LOC107695020
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26273839 ~ 26284115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230877.3
GGCCGGGTGTGATGAGGGTGCAGCAGTGGGCCGGGTTTAGTCTGAAGGCTCCGCTCCTGTTCTCAGTGTTGAGGTGTGGGAACTCGCGCGGGTCCTCCTGCTGCTCTTCAGCTCCacgctgctgctggaggaggaaaCACGTGGTGGGGTTCAGCAGTCGCAGCTACAGCGCGGGCTCGGAGGTGGTGATGGCGGAGGAGGCGAAGAAGCTGGCGGCGTACGCTGCTGTGGACAACCACATACAGaaTAACCAGATAGTAGGAGTGGGGAGTGGTTCCACTATAGTCTACGCTGTGGACAGATTGGCTGAGAGAGTGAGGCAAGAGAAGCTGAAAATTATATGCGTTCCTACGTCATTCCAGGCTCGTCAGCTGATTCTGAAGcatggcctctctctctcagatttaGACAGACACCCAGAGctgGATGTAGCGATAGATGGTGCAGATGAGGTGGACGCTTCGCTGACACTTATTAAAGGAGGCGGAGGATGCTTGACACAGGAGAAGATCGTAGCTGGTTGTGCCAAACACTTTGTCGTCATTGCTGACTACAGGAAGGACTCGAAGGCACTGGGGCAGCAGTGGAAGAAAGGTGTTCCAGTAGAAGTGATTCCCATGGCCTACGTTCCTGTGTCCAGGACTATTGCCCGCCGCTTTGGGGGGGAAGCTGTGCTGAGAATGGCCGTCAGTAAAGCGGGTCCTGTGGTGACTGATAACAGCAACTTCATCCTGGACTGGAAGTTTGAGCATGCTCAGAACTGGAAAGAGGTCAACACTGCCATCAAAATGATCCCAGGTGTGGTGGAGACAGGGCTGTTTGTGGGGATGGCTGAGCGAGTTTACTTTGGGATGGAAGATGGAAGTGTGAAGATCCGAGATCCTCCTGTTAACTGAAGGGGAACGAGGAGAACGCCTTTTCCCGCCTGCTGCAAAGACAAGACCAGCCTGACACCGCAGTGCCAGTAGAGTACACACACTCGTGCAGCTCATGCGTGCCATCTACTGGAGAtaactactacttctactggGAGAGAGACATGCAACCACAACATTTCCTAATATCTGATGAAGGTTTGAGTGTATGAAAAGCAGATGTGTACGCATTCACCATGTCATACACCTCGTCTTTCCTCTCTATTTTGTTTCTCGTAGTGTTGTTAACCACTCTGTTACTGACCCTGTACTTAGGGTAAATCTAAAGCTGCTAAACAGCTTGGCCTTCTGGCAGCCACAAAATTAAGCCTAGTCTAGgactaaatcatttaaaaacatttattagttGAAACTAGACCTTTAAACCTTTAACCTGGTGAAATGGCTGTTACTGTCTGccttctgtttgtgtgtgttttttctttactgtctcAAATTTTTTGATTCTTGTCATTTCTGCATGTCTCTACACACTTTGAATTTGAAGCCATTTCTAGATGTACTTTGATCTCTGTGCCTCATGCATCTTTCACTTTGTTTCGCTTGGTTGTTGCCTTGTATTTCAACACTTTTTGTTATATTGAACCAAAGCATGACAGTGGTGGGAGATTAGCTAAATTTAGCGCACACACTGCagttaaacacttttacacatttaaaggtgcatggatttcttttttatttttctctgcaTTCAGACCTCATTAACGGTATGGACCAGTACCTATAATCAGtagatttatttacatttaagtgTCCGTCTCTCAAGTGTCAGATTAATACCTCTGTTTACAATTAGGCCACtgttttacatttctttcacaTTTCAATAATAACATGTTAAGGTTTATATCAAAACAATCAAATGAGCAGATGCAGTTTTGGCTCTTTGGAGCGTTGAATGAATGTAACCACAGTTTATTTCAGATTGATCAGTGTTTTGAGCTCAGATTTCagggaaaaaatgaagaaaaatgtgATCTTGAAAAAACATAGTACTACTAGTAATGCAGTAGTATTGGGTGTGTATTGGGTCTTATGaatatttgatgtaaaatgAGAGGGTCAGTATTTTGGATGTTACAGCTAGCTTTGATCAGATAGAGCCACAgatttgttaaaaatatatacagtacagagcagCAGCCTTGTCTGCCTATGTATGGACTGTATATGCCAATTGATTCAATTCAATTTGTACAATTCGTATTTTTCTTTGATGTGCCTATCAATCTCAACAAACTGTTGTCAGGAATTTACAGTAGCACAGGTTTCCAGCAACCTGGCTTAACTCAACCCAAGTGATCAGGCCTTCTGCTCCTTTATGTTCTTAAGAGATGTTTGTCTTGTGTGACTTTCTAATGAAGTCACTGTGACCTATGACAACACCAGCTTTATGTTGACAATGTTTCTGTACCAATACTACTGTGACATTACGGTTTGGATTAGCGAATGGcattctttattgttttaaagaCCAATCTTGCATTAAAAGAGGACCAATCAAATAAACAAGACTTGTggta

Function

symbol description
rpia Predicted to enable ribose-5-phosphate isomerase activity. Predicted to be involved in D-ribose metabolic process and pentose-phosphate shunt, non-oxidative branch. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in immature eye; liver; midbrain; retina; and yolk syncytial layer. Orthologous to human RPIA (ribose 5-phosphate isomerase A).

NR:

description
ribose-5-phosphate isomerase

GO:

id name namespace
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0004751 ribose-5-phosphate isomerase activity molecular_function

KEGG:

id description
K01807 rpiA; ribose 5-phosphate isomerase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230877.3 True 2461 mRNA 0.44 9 26273839 26284115

Neighbor

gene id symbol gene type direction distance location
slc4a11 slc4a11,LOC107747581 coding upstream 4144 26143357 ~ 26269695 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding upstream 148227 26089983 ~ 26125612 (+)
LOC103044529 LOC103044529 coding upstream 187689 26080829 ~ 26086150 (+)
LOC103023829 foxi3 coding upstream 255287 26014323 ~ 26018552 (+)
letm1 letm1,LOC107556916 coding upstream 589828 25642553 ~ 25684011 (+)
eif2ak3 eif2ak3,LOC107683275 coding downstream 1662 26285777 ~ 26331700 (+)
atrn atrn coding downstream 51485 26335600 ~ 26469671 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding downstream 408038 26692153 ~ 26720305 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding downstream 543233 26827348 ~ 26977774 (+)
cep170 cep170 coding downstream 809983 27094098 ~ 27181917 (+)
G219404 NA non-coding upstream 68967 26202229 ~ 26204872 (+)
G219374 NA non-coding upstream 326495 25947009 ~ 25947344 (+)
G219367 NA non-coding upstream 372970 25900643 ~ 25900869 (+)
G219286 NA non-coding upstream 466820 25747231 ~ 25807019 (+)
G219282 NA non-coding upstream 581322 25632476 ~ 25692517 (+)
G219416 NA non-coding downstream 102798 26386913 ~ 26387761 (+)
G219410 NA non-coding downstream 178593 26462708 ~ 26474304 (+)
G219432 NA non-coding downstream 379306 26663421 ~ 26663641 (+)
G219433 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 non-coding downstream 383936 26668051 ~ 26684245 (+)
LOC111196015 NA non-coding downstream 512128 26796243 ~ 26799752 (+)
LOC103047652 NA other upstream 831258 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 971252 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 1099131 25161727 ~ 25174708 (+)
G219050 NA other upstream 1431306 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 1806972 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 916337 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 2206731 28490846 ~ 28551769 (+)
G220074 NA other downstream 2435141 28719256 ~ 28720661 (+)
G220194 NA other downstream 2857252 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 3351946 29636061 ~ 29640401 (+)

Expression


Co-expression Network