CI01000009_00805606_00808374


Basic Information

Item Value
gene id CI01000009_00805606_00808374
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 804904 ~ 808404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00805606_00808374.mRNA
TTATATAAACCTGGCTGCGCTTGTCTCTACAGTCCTCCATAAGACCAAATAATAAATCTTTTCAAAACAACACAAATTGGTCATCAATATTCTTTGCCATAAAATCACAAATATTTTTTCTAAATGGTTTTACAATTGGGCAGCAATCACAGTTTCAGGGGCAATTCCTACAGCACAAGAAGTCACGTGGTTGTGCGGAAACGAAACGCTTGTTCCTGCGCAGACCGATAGAGACAGAGCGCATTTAGTATAATCTGGAAACCACGCAATCCAACAGTCTCTATTGACTTTGTATTGCGTGAGGCTGCCTCCTTGTCATTTCTGACTTATTGCAAAAAAGAATTATTTCACCTGTCGCCGAATACGTTCCCCTCCAATGTAGTTCTTATAGTAGCCTAATATGACCCGTTGCGCTCTGTCTCACCACTTTTGCCTGTATCCACTTTTGTGTCCTTAAACATTCGTTTTTTGGGGTCGACAGCTTATAAAAACTTAGTTCTGGGTTTTTTTTTAGCTTGTTTGCTGTACACCATGTCACATAGCAGCTTTTAGACATTGTTCTATTTTTTGTTATAAGCCAGAAATGACAAGGAGGCAGCTTCACGCTATATAAAGTCAATGGGGACTGTTGGATCGTTTCCCCTCCCCCAGATTATGACGCGTGTCGCTCTGTCTCTAGCGTATGACATCAACAAGGACAAGATGTTTCAGTATCATTACAAGTTCGAAGCCGCCAAACATCACATCACTATTCTAAGTGTTTTGCTTACAATAGGAAAAACTATGAGGATTTTATTAAAGTTCATTCGAAATCGGCAGGATTCACCTAGAAAAGGACAAGATGTCATGTCTACGTGGGAATCTAATATTCCTTCGAAGATTGTTGAGATTGAACATGATTGTATGTCTGAACCTTTCTCAAAACCATACTTGTCTTCTACTCTTAAACAAAGCATCACCTTGGACACGTTTAAATACATTATAAGAGACCTGGCAACGCAGCTAGATAGAGTCACAACAAAGGTTTATGGAGAGTCCAAAGCTTACAATGTGGTGGATGATTTGAGTTTGGGGGAGTGTGAAGTTTTCATTTTCAGATGGTCTGAGGAACTAAAGTGTTTGCGTTCAAAATACAGAAGCCACCTAGGCAAGATTTCCAATGTTGAGAGATTCAGGAGGAGTCTGGAAGGTCTAAACATCAGAGATGATCAAGTTCAGAATCTCATAGAAGTTCAGAAAGATTTTCACTGGTTTATTCACATTTTGAAGTCACTTCCAAAGTCCTCAGTGTGTCAAGAAGGATGTGCTAGAGAAGAGCTGCTGAATCTATACAGACAGTGGAAGAAAGGGCATCTAATCAGTATGCTTCCTATCATGGACTTTATCATGAAGACACTACTCAAGGAAAAGGTTCACATGTACCATTGCAATTTGAACTGCATCTTCTAAAAGACTTGATAATGAAATTCTCACTTTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00805606_00808374.mRNA True 1479 mRNA 0.39 7 804904 808404

Neighbor

gene id symbol gene type direction distance location
CI01000009_00719164_00724772 SRPX coding upstream 79853 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 94099 704065 ~ 710805 (+)
CI01000009_00620687_00621072 NA coding upstream 183367 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 187142 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 195529 608513 ~ 609375 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 42838 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 105591 913995 ~ 916565 (+)
CI01000009_00920570_00955979 TBC1D4 coding downstream 112024 920428 ~ 956574 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 226157 1034561 ~ 1035728 (+)
CI01000009_01110684_01111118 NA coding downstream 302280 1110684 ~ 1111601 (+)
G50978 NA non-coding upstream 5045 799627 ~ 799859 (+)
G50973 NA non-coding upstream 17414 786884 ~ 787490 (+)
G50921 NA non-coding upstream 28395 776284 ~ 776509 (+)
G50917 NA non-coding upstream 44631 757122 ~ 760273 (+)
G50913 NA non-coding upstream 48733 746194 ~ 756171 (+)
G50984 NA non-coding downstream 29536 837940 ~ 840919 (+)
G50947 NA non-coding downstream 65698 874102 ~ 877421 (+)
G50954 NA non-coding downstream 69867 878271 ~ 881321 (+)
G51001 NA non-coding downstream 86251 894655 ~ 894871 (+)
G50933 NA non-coding downstream 96928 905332 ~ 908981 (+)
G50920 NA other upstream 34671 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 709117 94371 ~ 97230 (+)
CI01000009_01431700_01434463 NA other downstream 614443 1429873 ~ 1435328 (+)
G51122 NA other downstream 871742 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1085831 1897343 ~ 1919516 (+)
G51274 NA other downstream 1446695 2255099 ~ 2350486 (+)
G51529 NA other downstream 2253629 3062033 ~ 3062587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037227 zgc:113314 coding NC_007120.7 CM002893.2 30421489 ~ 30427117 (+)