LOC103023829 (foxi3)


Basic Information

Item Value
gene id LOC103023829
gene name foxi3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26014323 ~ 26018552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230911.3
TGTTGCTCCGCGCGCACAGAGTACCGGAGCCTGGATCCCGCTGCTCCGAGAGCGCGCGCGCTCGCCGTCCGCTGTGTCGCGAGCTGCGACGATGAATTCCATGGAGGCGCAGCTACAGCACACGGCGCCCACGCAcccccaccatcaccatcatcaccccgCCCACCCGGCCGCACTGCAGCCGCTGCCCAAGAGCGCGCACGAGCCGTCGGACGTGGCTGCGTACTGCGACGGCTTCTCCTACCACCAGCAGGGCGTGGCGCCCTACGGTCTGAGCGAGTACGCGCCCGCCGCGAGCCCCTACCTGTGGCTCAACGGGCCCACCGCCACTCCGCCGCCGCCCCCCTCTGCCTCCTCGTACCTGCACGCGGGAGGAGGACCGGGCCCCCCCGCGCCTCTCGTGCCTTCATACGGCGCGCAGAGGCCGTACTTGAGCGGCGCTCCTGACCTGGGCTGGCTGTCCGTAGCGAGTCAAGAGGAGCTGCTGAAGCTCGTGCGCCCCCCCTACTCCTACTCTGCGCTCATCGCCATGGCCATCCAGAGCGCGCGCGAGAAGCGTCTCACGCTCAGCCAGATCTACCAGTACGTGGCGGACAATTTCCCCTTCTATAAGAGGAGCAAGGCGGGCTGGCAGAATTCCATCAGACACAACCTGTCACTCAACGACTGCTTCAAGAAGGTGCCGCGCGACGAAGACGACCCAGGAAAGGGAAATTACTGGACTTTGGACCCCAACTGCGAAAAAATGTTTGACAACGGAAACTTCCGGAGAAAGCGCAAGCGCAGGTCGGACCCCAGTGGGGGCTCTAAGGCTGATGAGGGTCGCCCTGTAGCGGCTCTCAGCGGCTCCTTGTCTCCCTCTCTACCTGCCCCCTCTCCCCCTGAAGCGGACGCGGCCGGCGAGGCTCCCCGCGGACCCTCGGCGCCCTGCCTGGCCGGGTTCTTCAGCACTGTAGCCGGActgacctcctcctcctcgtcctccgCCTCTGCGGTCAGACACGGGTCTCTCGGACTCCTCAGCGAGCTCTCCAGCCGCAACATCGGCGCCTACCAGCACGAGCACGCGCCCGCTGCAGAGCAGCACGAGAGCGCGCACGCGGCCAGAGGCCCGCACCACGGCGCGTTCACGACAGGAGCGCAGAGCGCGGGACACTTTAGCGGACATTTCTACAACGGCTTCAGCGTGAACAGTCTGATCTACCCGCGCGAGGGCACGGAGTTATGATACCTCACCCATTCATACCGGACACATGAGGGGGGCGCGCTGAGGAAGGCAGAGCCTAAACTGTCACTATACTATCAGGGCAAAAGACCCcaaaacactcttaaaaataaagcgtCCCAAAGGGTTCTTGGGTTGGATGTATACGgttaattaaacatttcataGGTTCTGAAcagaaattaaactaaattaactgaagtgttctttatTCAAATAAGTGGCATTATACCAAATAACCCTTCTTTACGGTCACgttatttttaagagtgaaccagacaaacacacagacatgtgTAATGAGACGGGTGTATCACTAAAATgcgcattttatttatttaatttaaatgtgttcatttgtCAAACGTGAATAAAACAGATCACATCAATTCCTAAATCGAGGTACTTTAGCAATgtgatacattttattaatgtggAACTGatgtacacatttatattaaacaattaattaatgaaaCCATTTTCAGCGCAAGCTGAAGTGGGAATCATCTACTGCAGAGCAaagtatttttcattattttaaatacactgtaCCACTAACTGTTGTCATGGACTACCCACTGCCCTGCACGTTAGACTGTTCCTGCTCTAATACAACTAATTAATCAACAaatcaagtgtgtgtgtaatagatcAGTAAAACAGTGAAATGTGCAGGACAAGGTTACTCCACACACtcagaaatacagaaacatgTTTGTAAGAGAAATTTAAAAATGAGTGTGAACATACATCTCCATCATGAACCATTTAAAGTGCCTTTGTTCTAAGAGCTCTTAGCCACTGATgatcaaaaataacaaaaaaaaaaaaaaacagtgatggTGTTGAATGTGGATTGACCCACCTCAGACCCCCTCTTTACATGTCCACTCTGTGTTTATTGTGcgttttttgtttgtaaattaTATGcaagtattttaaaagtatttatgttaaattatgtatttttgcaGTCAGTTTTAGAGGAGAAAGTTATATTTTCTATTGGGATCATGCGAATGAGTAAGTtatgaagagaaaaaaactatttcttcgcacactattaaaaataaagttccTCAAATGGTTCTTGGCTCAGACATATGGCACTAGAAAACAACCAAAGGTGGATCTTCTATGTATCACTCTAAATAATTGTTTctggcacctttattttttatagtgtgAGATAGTAAGTGCCACTGCAATTCAGTTTACCTTCAGCTTCAGGTGGATCCTGATGTTTCACGTGTTAAAGTGCAAAGAACTGAACCCTGTTTGAAGGGGATTACAACTTCAAAATGTCTTCTTTTAATCTTCAAATGTCTTGAATCATTTTCTTGTCATGTTTATTTGCATAGTTTTCTCTGCCTTTGTAGAatcttttgtacttttttatgaACATAgagtttttaaaaattctaagcTGCAGTTCttacatgtttttacatgtttttattttctcatttcagCTATAAAATCTTTAACCTACAGTCTTTCTATGCATAATCATCCCAAATAcagaaacatgttttttaaataaataagtgagaGTATCACATTTGAGTTTTATTTAACCGgatcagtatttttatttgggaaagGGGTATAAGGAAGAATGCTGCACATTATATTGGAGTGAAagctttaatactttaatacagATATAGATTAGATACTTACAGATGGGCTTTGTGTACATAATGAGGGCTGTCTTCACAGGTgcctttaaacaaaatattgaattcaaacttcattttaaagtagATTATAAAGAAGCTGTGGTTCAGCAATTATAAACCAGAGTTTTAAAGAGTGTTTTTCACTTCCTTTATACTTTCTGGTTACACCCGGTACAAATAGTTGCTATAATAATTACATAGATTAACTCATAAATAGCTTTAACAacaattcattattttagtgtttaattcatttattaaccTGACCACCCTTTTGTCTTGGATTAAAGTTTGGGAAAATTTGGAACTaaagaatggaccaatagaaatgccccAAAATCTACAATGACTTCTATTGTAAGTTAAAATGATTCATTCATTCTCTGTAAAGTTACCATTTAGAAACTATAATATTGGACTTTAATAAGTAGATAGATTGACTAATTGtcaaatagatagacagacaaatacatatgtatgtatacagatgtactttattgatccctgagGGAAAATCTCTTTTGTACTTTAAcatcaaataaaattaataaagtcAGATACCAGATAA

Function

symbol description
foxi3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

NR:

description
PREDICTED: forkhead box protein I3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09413 HCM1; forkhead transcription factor HCM1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230911.3 True 3478 mRNA 0.44 2 26014323 26018552

Neighbor

gene id symbol gene type direction distance location
letm1 letm1,LOC107556916 coding upstream 330312 25642553 ~ 25684011 (+)
kiaa1109 kiaa1109 coding upstream 402139 25533591 ~ 25612184 (+)
LOC103041526 NA coding upstream 577051 25431246 ~ 25437272 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding upstream 583764 25417380 ~ 25430559 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding upstream 607460 25340464 ~ 25406863 (+)
LOC103044529 LOC103044529 coding downstream 62277 26080829 ~ 26086150 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding downstream 71431 26089983 ~ 26125612 (+)
slc4a11 slc4a11,LOC107747581 coding downstream 124805 26143357 ~ 26269695 (+)
LOC103042087 rpia,LOC107671341,LOC107695020 coding downstream 255287 26273839 ~ 26284115 (+)
eif2ak3 eif2ak3,LOC107683275 coding downstream 267225 26285777 ~ 26331700 (+)
G219374 NA non-coding upstream 66979 25947009 ~ 25947344 (+)
G219367 NA non-coding upstream 113454 25900643 ~ 25900869 (+)
G219286 NA non-coding upstream 207304 25747231 ~ 25807019 (+)
G219282 NA non-coding upstream 321806 25632476 ~ 25692517 (+)
G219271 NA non-coding upstream 568824 25445271 ~ 25445499 (+)
G219404 NA non-coding downstream 183677 26202229 ~ 26204872 (+)
G219416 NA non-coding downstream 368361 26386913 ~ 26387761 (+)
G219410 NA non-coding downstream 444156 26462708 ~ 26474304 (+)
G219432 NA non-coding downstream 644869 26663421 ~ 26663641 (+)
G219433 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 non-coding downstream 649499 26668051 ~ 26684245 (+)
LOC103047652 NA other upstream 571742 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 711736 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 839615 25161727 ~ 25174708 (+)
G219050 NA other upstream 1171790 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 1547456 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 1181900 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 2472294 28490846 ~ 28551769 (+)
G220074 NA other downstream 2700704 28719256 ~ 28720661 (+)
G220194 NA other downstream 3122815 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 3617509 29636061 ~ 29640401 (+)

Expression


Co-expression Network