adss (adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748)


Basic Information

Item Value
gene id adss
gene name adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26692153 ~ 26720305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234673.3
CTCTCCGGTAAGGCGGCTTCGCGGGCTCGCCGTGGCCGGAGCAGCATCGctgagagagcgcgagagcgagagCAGTCGGAGCAGCGGGGGAGCCGGTATGTCGCAGCAGGACAGGAGCGCGGATGTGGGGAACAGAGTGACGGTGGTGCTGGGGGCTCAGTGGGGCGATGAGGGTAAAGGGAAGGTGGTGGACCTGCTGGCCCAGGACGCTGACATGGTCTGCAGATGTCAGGGAGGCAACAATGCAGGACACACTGTTGTGGTCGACTCTGTGGAGTACGACTTTCACCTTCTACCTAGTGGCATTATCAACCCCAAGGTCACTGCCTTTATTGGTAATGGCGTAGTAATTCATCTCCCTGGCCTGTTTGAGGAGGCTGAGAAAAATGTACGCAAGGGAAAAGgTTTAGAGGGCTGGGAAAAGAGGCTTGTCATCTCTGACCGCGCCCACATTGTGTTTGATTTTCATCAAGCAGTGGATGGAGTTCAGGAGCAAGAGAGGCAGCAGCAAGCTGGAAAAAATTTAGGAACAACAAAAAAGGGCATTGGTCCAGTGTACTCAGCCAAGGCTGCTAGGAGCGGCCTTAGAATATGTGACCTTCTGTCTGACTTTCAGGAGTTCTCAGAGAGGTATAAAAATTTAGCCCTGCAGTACAAATCAATGTACCCATCGTTGGAGATAGATATTGATGGGGAGCTGGGGAAGCTTGAGGCATACGTGGACAGGATAAAGCCTATGGTCAGAGATGGGGTGTTCTTCATGTACGAGGCTCTGCATGGGCCTCCTAAAACCATTCTGGTGGAAGGTGCCAATGCTGCTCTGCTGGACATTGACTTTGGAACGTACCCCTTCGTAACCTCCTCCAACTGCACGGTGGGTGGGGTGTGTACGGGTCTCGGCATGCCCCCTCAGAATGTGGGAGAGGTTTACGGCGTGGTCAAGGCCTACACCACTAGAGTGGGCATCGGTGCCTTTCCCTCTGAACAGAGCAATGAAACTGGGGAGCTGCTACAGACGAGAGGGAAGGAGGTGGGAGTGACCACCGGCCGCAAGAGGAGATGTGGCTGGTTGGATCTGGTGCTTGTCAAGTATGCTCACATGATAAATGGCTTCACAGCcTTAGCTCTAACCAAATTGGACATCTTGGATGTCTTCCCTGAGATCAAAGTCGGTGTGGCTTACAAGGTAGACAACGAATGCATACCACATTTTCCAGCGAATCAGGAGGTGTTACAGAGGGTTGAAGTCCAGTATGAGACTCTGCCTGGTTGGAACAGTGACACTTCTGCTGCTAGGACCTTTGAGGAGCTTCCAGACAACGCACAGAAATACGTTCGCTTCATCGAGGAGCAGCTTGGGGTGCCTGTGAAATGGATTGGTGTTGGAAAGTCGCGAGAGTCTATGATCCAGCTGTTTTAAGGGAACAGGCAGGCTGCTCATTCCCCCATTTCTCCATGGTGTACAGGGCTTATTGAGGGGCTTGCTGATTCAGGACCAGAGTCCTGCTTCTTACCTCTCCCCTCACTGCAGCTTCCTGCTGGCAGAAGAAAACAACAGGTTCTGTCCACTCCATCATTCAATCCTGTTTTCCAAAACAGtctcaaatcttttttttttttttttgaggtcagTGTAGGGCGTCATAGTGGAAAGTCAGTCTCACACTAGTATCCAGTGGTCATTCCCATGTATTCCTCACTGAAACAGACCTTCACGTGTCCTTATGGATCTGCTTTGTCTTTTATTCTTGGTGCAGTGATTTACAGTCTGATTTGGATGAGCTTTTAGAGCACTATTGAGCTCAGAGCCACCATCTTTGTGTGCCATTGATCTTCAGTTTTTTAAGCTTCGTTCACTGAAGCTGTTTAGGTTTAAGCCATTGTTTGACTGCGTGCATAATTAAAGTTGGTTAACGTAGAACCTGACCTTGAATGTAGGCCCTGATATTTTACAGACTTGCATTAACTGTTAAAATTTTTATATGCAAAAATATGAAACCTTTGTTTAGGCCAGTGTAattaactatattattattagattataaATGTCTCAATGACATTTCATGTCTGGATTTAAATTTCAGGATTTTTAAATCTGAACCAGAAATTGGTATTTATTTTGTCACTTTGCCACGGTTTTGTTCACATACTGTTCTTGTTATACTGTTGGAATGTATATCACATGTGTGTAATATTAGCTTTTTAATGATTCTCAGTCTCTTTTCAATGTTAATTTACATTGAATTGTTGATATGGTTGTCCTTGTTTGTGTACTGTTGAATGATCGTAGATTTTATTTGTCAATATGTCAACAtataatcataatttatttacaaacaaACATGATTTTGTTCACAAAATACAACTTGTTCTTGATAATTCTCTATGAATCAGCTTAATTTCTGTTCATTTGATTAGCCTGTGAGAGCATGAaataagttttagtttttattaaaaagttggaagcagaaataaattattttatttattgtcctTCTAATATAAAGTAGACTTTTACTAAAAATGTCTAATATTAAATTTGGCCTTTGCCCTGAAAGTATATGATTCTTTTTTTgctatagaaaaatatatagtgttGCACATCTACTACAGCAAAGACTGGTAAGTTGTCAGGCCAGCTTGAGATGATACAAATTGAATGTATTTTCAATGTTGAGAATTACACTAATCATCAAACAAattgttgcacccagaaggtAGTGTCAGACTGCAAAGTTATTTGTAAGGAAGATACAACTAAATAAGAACAATGAATGATTATGGTTGATTTCGACCGCAGGAACGGCTTGAGAATATTCATGCTGAATGGGATGGATTaacacaggacaccattaggaacctctacgaCTCTACAGTGGCAAGACATATTGTTACACATGTTggacactacttctgtatgtgcaGCTCAATAAATAATGCCCGTATAAGTCTAaagtttaaatcatttatttgtcCTGGTAGCTTTGCTTTTCTTTCAAATACTtattctgggtgcaactatgtTTTTTGATGcttagtgtgtatatatggcTCAAGTTAGCTTAGTCTCAGGTTCCTCTGCTGATCATAGCTGTGTATAGTATTTCTTATATGCTGCATATTGTTGGAGGTGGgtgatttttaatgtttattgaaTTGAAGTGTAACTGTTCTCTGCATTATAATCTGTATGTaatatcctttttttatttttgccacaaatgtagctaaaaaaaaaataaatcagttatttaagttaaatggttaaattgtACATTACGTAAAGCTTTAGAAAAAAGAATATTGTAGTGATTGAAAATTTGGAGCACCactatatatcagattaaattttGCCTGAGCACGTAGGCACCAATATGTCCATCTTTCGTTTCCCTGCAAAGTTACTGCATTGCAATCAGACCACTGGGAGggatttttatctttatttctgCCTTTTGActatgtaaataataaagtaaataaattaataggtaaagtatttatttgccAAATAAAACATGGACACACTGCGATTGTccttttaaaccctttaaaataaaaccagaaaaataaattttCTTGTACTTTTGCTACCAATACGGAAATAATAGCTCCAATAGTAGCTTGCTTGGTCTCTGTCTTTTTCCTGTTCACACATTCTGTACATCAACACATctccacactgcccacacagtAAGGAAGAACAGGTGCCTTGTTAATATAGACTTTTGGTTTTCATCGTGTGTCTTAAAGGTCAGAGTTGGTTGTGAATGTAAGTAAATGGATAGATGTGCTTGTTTGAATTAtatagttaaatattaaataaaatgacccATTCATATAATTTCTTACTAATGCCATATTCactatgtgtccaaatgtttgtgtacACACCTTCTAGTGAATGCATTTAGCTGACACAGCAAAGAATGCTCATGATGCTCCATCTAGTCATTTTGGGAACAGTTGaggggagttgaggatgagtagTGGTGATtattcaacatcctgacctcactaacctcATGTACTTATCATTAAAGGCAATCAGAATcctcaaaagaaacaaataataagCAAATGTCCCAATATTTTGTCCATATCGTGTGTGTGCAAGTCTGTATGCTGACATTATTAAGGCCATCACACAGCCCCAAAGAGGTATGAGTGTTCACAAGAGCTTGTGGTTTTATCATCAGGTTCTTCGTTATATCAATATGTAAAACCACTTGTCTGTTCAGAAAAGGAGACGACAGTCTAATATACATTACTGTATAGTTTTGAGATCCTCAGAACTAAtcactgtttgttttgttcACGCAGTTGAACTGCATGTTTGCACAGAAATCCACTGACCTCTGTTCTTGAATTCTGTATTGTACTGATGCTGTTGGACCTTTAATGTATGTAAATACTGAATGCAGAGCCATATTCTCTATCTCGTCTTCTCgtttgtgtgtagtggtgtttAATATGCTCGGCTCTTAGGGGATGGTGCAGTTTGGGTGTGCATGTTTTCCTGCAGTGATTTATACAACACAGATCTCACTCTTTGGAGTTTAAAAAAGTTGATATCCCCAAAAAATGTAGACAGTGATCAAAATAACAGTCAATAAATACAAACTTGAGATACATTG

Function

symbol description
adss Enables adenylosuccinate synthase activity. Involved in several processes, including IMP metabolic process; aspartate metabolic process; and cellular response to electrical stimulus. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Biomarker of sarcoma. Orthologous to human ADSS2 (adenylosuccinate synthase 2).

NR:

description
PREDICTED: adenylosuccinate synthetase isozyme 2

GO:

id name namespace
GO:0044208 'de novo' AMP biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0004019 adenylosuccinate synthase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01939 purA, ADSS; adenylosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234673.3 True 4637 mRNA 0.40 13 26692153 26720305

Neighbor

gene id symbol gene type direction distance location
atrn atrn coding upstream 222482 26335600 ~ 26469671 (+)
eif2ak3 eif2ak3,LOC107683275 coding upstream 360453 26285777 ~ 26331700 (+)
LOC103042087 rpia,LOC107671341,LOC107695020 coding upstream 408038 26273839 ~ 26284115 (+)
slc4a11 slc4a11,LOC107747581 coding upstream 422458 26143357 ~ 26269695 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding upstream 566541 26089983 ~ 26125612 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding downstream 107043 26827348 ~ 26977774 (+)
cep170 cep170 coding downstream 373793 27094098 ~ 27181917 (+)
abcg8 abcg8,LOC107666472 coding downstream 562295 27282600 ~ 27293085 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 712557 27432862 ~ 27467984 (+)
slc3a1 slc3a1,LOC107585281 coding downstream 753604 27473909 ~ 27492416 (+)
G219433 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 non-coding upstream 7908 26668051 ~ 26684245 (+)
G219432 NA non-coding upstream 28512 26663421 ~ 26663641 (+)
G219410 NA non-coding upstream 217849 26462708 ~ 26474304 (+)
G219416 NA non-coding upstream 304392 26386913 ~ 26387761 (+)
G219404 NA non-coding upstream 487281 26202229 ~ 26204872 (+)
LOC111196015 NA non-coding downstream 75938 26796243 ~ 26799752 (+)
G219567 NA non-coding downstream 78292 26798597 ~ 26798846 (+)
G219571 NA non-coding downstream 84843 26805148 ~ 26805498 (+)
G219589 NA non-coding downstream 154599 26874904 ~ 26875104 (+)
G219590 NA non-coding downstream 155025 26875330 ~ 26875714 (+)
LOC103047652 NA other upstream 1249572 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 1389566 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 1517445 25161727 ~ 25174708 (+)
G219050 NA other upstream 1849620 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 2225286 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 480147 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 1770541 28490846 ~ 28551769 (+)
G220074 NA other downstream 1998951 28719256 ~ 28720661 (+)
G220194 NA other downstream 2421062 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2915756 29636061 ~ 29640401 (+)

Expression


Co-expression Network