LOC103024887 (dync2li1)


Basic Information

Item Value
gene id LOC103024887
gene name dync2li1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27192032 ~ 27198625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234679.3
ACATCACTAAAGCGCGCGGTAACCCCTCGCAACAGAAATCACTGTACGGTCTACTCAGCTAGGTTAGCGATAGCTTTTGTATATAATGGCTGAATTTTAGCCATAACCATGCGAACATTCATCTAACTATGACCATTTAAAGACCTGCGGAGGAGACATGCCTAGAGTTAGTTCAGACACGCTGTGGGACTTTGCTGCGGCGGAGCTTCAGACCAGAGAAAGCAGAAGTGCTGATGAAGAGGCTCCAGAGGAGGAGGCTAGTGAGCGAGAGACTGTGTTGTTTATGGGCAGTAAATCTGGGGGTAAAACTACAATATTGCTGAGGTGCCTTGATAGAGATGAAGCACCGAAACCAACCCTTGCTTTGGAGTATACGTTTGGGAGGCGAGCAAGAGGACATAATACGCCTAAAGACATAGCTCACCTGTGGGAACTGGGAGGAGGTATTTCTTTATCTGATCTAGTTCAAATACCCATCACCAATCAGAATATCAGCACTGTGTCTGTGGTGCTGGTCCTGGATTTGTCAAAGCCCAGCACTCTTTGGGGCACCTTGGAGAAACTCCTGCAGGCAGCCTTGAACCATCTGGAAAAAGTGTGTGCCTTACCGCAGAGGTCGGGAGCCAGCAAACAGAGAGAGCTGCTGCGTATTCTACCTAAAGATCACCCTGACAGAGAGCTCATCAGTCCCTTCCCTGTGCCTCTTCTTCTGATCGGTAGCAAGTATGATATCTTTCAGGACTTTGAATCAGAGAAGAGGAAGGTGATTTGTAAAACCCTCCGTTTCCTGGCACATTATTACGGTGCATCACTGATATTCACTAGCAGTAAGTCAGAGACCACAATGTCAAAGGCAAGAAGCTTTGTCAGTCATCTAGCATTTGGAACGGAGAGAGGTAAGTCTTTGTCTGCAGACCCCAGCAAACCTCTCATAATCCCAGCTGGCATGGACTCTCTCAGTCAGATAGGATCTCCTCCAGCCATTGATGTTGATATTGGAACACTGCATGCTAGAAACCCGCTGGATCTGTGGAAGAAAGTTTTTGAAAGAGTTTTCCCTCCAGAGAGCACTAAGGAGAATAAAGAGGTGAAGGATCCAGCCAAAGACCCTCAGTACTGTGAGCCTCTTATAGACTCTATGAGAGCTCAGAAAGATCAGgAGTTGGAACAGTACAAGCGCGAGCAGACAAAGTCCTGGAAAGGCTTGGCTTTGGAGACCTAGGACTGGATCCTCTTTGAAAAAATTAGCAACACTCATCTACTGCTAATGTAATTGAACCTATTTTGATACCGTTTTAA

Function

symbol description
dync2li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within intraciliary transport. Located in non-motile cilium. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1).

NR:

description
PREDICTED: cytoplasmic dynein 2 light intermediate chain 1

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0007275 multicellular organism development biological_process
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003774 motor activity molecular_function

KEGG:

id description
K10417 DYNC2LI; dynein light intermediate chain 2, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234679.3 True 1299 mRNA 0.47 14 27192032 27198625

Neighbor

gene id symbol gene type direction distance location
sdccag8 sdccag8 coding downstream 99904 26987193 ~ 27092128 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 coding downstream 507270 26667942 ~ 26684762 (-)
gfra4 gfra4,gfra4a,LOC107747595,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding downstream 650875 26489724 ~ 26541157 (-)
LOC103044048 NA coding downstream 1052859 26127628 ~ 26139173 (-)
fgfr3 fgfr3 coding downstream 1363386 25750867 ~ 25828646 (-)
LOC111196017 LOC108435962,LOC108426032 coding upstream 41846 27240471 ~ 27242080 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 69037 27267662 ~ 27282494 (-)
lrpprc NA coding upstream 96780 27295405 ~ 27383267 (-)
prepl NA coding upstream 287562 27486187 ~ 27510148 (-)
six2 six2,six2a,LOC107666385,LOC107602487,LOC107711421,LOC107602488,LOC107733704 coding upstream 665807 27864432 ~ 27867283 (-)
LOC111196016 NA non-coding downstream 79271 27110549 ~ 27112761 (-)
G219675 NA non-coding downstream 316299 26875289 ~ 26875733 (-)
G219669 NA non-coding downstream 392180 26799406 ~ 26799852 (-)
G219666 NA non-coding downstream 395311 26796252 ~ 26796721 (-)
G219550 NA non-coding downstream 537063 26654717 ~ 26654969 (-)
G219721 NA non-coding upstream 2467 27201092 ~ 27273941 (-)
LOC111196019 NA non-coding upstream 32918 27231543 ~ 27236745 (-)
G219737 dync2li1,LOC102781421 non-coding upstream 57964 27256589 ~ 27257731 (-)
G219712 NA non-coding upstream 63952 27262577 ~ 27264035 (-)
G219743 NA non-coding upstream 99514 27298139 ~ 27298546 (-)
G219671 NA other downstream 364505 26827028 ~ 26827527 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other downstream 434440 26738804 ~ 26757592 (-)
G219510 NA other downstream 717785 26472628 ~ 26474247 (-)
LOC103046115 lrit3 other downstream 1965782 25218149 ~ 25226250 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other downstream 2491383 24683237 ~ 24700649 (-)
epas1 epas1,epas1a,LOC102794480,LOC108430450,LOC107739260 other upstream 916301 28114926 ~ 28302444 (-)
G220285 NA other upstream 2361434 29560059 ~ 29563970 (-)
G220313 NA other upstream 2445516 29644141 ~ 29644434 (-)
pkdcc pkdcc other upstream 2804974 30003599 ~ 30064781 (-)
ppp2r5d ppp2r5d,LOC107728061,LOC106605890 other upstream 4079628 31278253 ~ 31330118 (-)

Expression


Co-expression Network