dcaf10 (dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687)


Basic Information

Item Value
gene id dcaf10
gene name dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24447813 ~ 24457455 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236406.3
TCCGCGCTGCAAAACAGAACCGGAAACACGTCACGTGTTGTCTCTGCTGTTGGCGGTGGTCCGGTGTTTTGGTTAATGGGTCTGTGCGGGGTCTGTGGCTGTGGCCCGGTTcgctgtgcgtgtgtgtagtgGGGGCTTAGTGCGGGTCCGCCGGGGTGTCCGGCGGGGCTGTGCGGTGAAGCGGGGCCGGGCTCAGGCCCCGAGTCTCCCTCCGGAACTTTCCACTTCAAAACGGCTCCGCCGCCGCCACAATGAGCTCGGGCCAGCCGAGCGACAGCAGCGAGCCGGAGGAGCCGCGGGGCGCCGGAGTCCGCCACCTGGACGAGCTGCTCCGAGAGGAGGAGAGCGACAaccaggaggaggaggaagaggaggaggcgaGCCGCTCCAGGCCGCCCTCTCCGCCCCCGGAGCGCCGCGGGGCCCCGGACCTCGACTCCGCCGGGGAGCACGCGCCTGGTTCGGCGTGCAGGAGCGCGGGGCTCTGCGACTCGCTGTTCTCGTGGCTGTGGAAGCGGACAGTCCGCAGAGGGCCATTCGTAGATCCAGCCCGCGATAACTTCCGCACCATGACCCGGCTTTACTCGTCCATGAGCCCCGCCACAGACTCGGTCAACCTGAGTACGCAGACCCACGGGGCCGTGTTCAACCTGGAGTACTCCCCGGACGGgtCAGTTCTGACTGTCGCCTGCGAACAGACCGAGGTGCTGCTGTTCGACCCTGTGTCATCCAAACATATCAAAACACTGGTGGAGGCGCACGAGGACTGTGTCAACAACATCAGGTTTCTGGATAACCGGTTATTTGCTACTTGTTCTGATGACACCACCATTGCATTATGGGACTTGAGAAAGTTAAACTCCAAGGTGTGTTCGCTGCATGGCCACGCGAGCTGGGTGAAGAATATTGAGTATGACACGCACACTCGCCTGCTCGTAACGTCTGGCTTTGATGGGAATGTCATCACCTGGGACACCAATAGGTTCACAGAGGATGGCTGCCCCCATAAGAAATTCTTTCACACACGGTACCTGATGAGAATGCGTCTAACTCCAGACTGCAGTAAGATGCTCATCTCCACTTCCTCTGGTTACTTGCTCATCTTACATGACCTTGACCTCACCCAGAGCCTAGAGGTTGGCAGCTACCGAATTCTGCGGGCTCGACGTGCCCCACTTAGCACAGAAGGATCCTCGACTGGCTCAAGGACTGGAGGCTCTCGTCACGTCAATGACAGCAAGTTGCATCCACACAGAGAAGgtTTATCTCCCAGAAACAGTCTGGAGGTTTTGACCCCAGAGATCCCAGGTGAAAGGGACAGAGGAAACTGCATTACGTCCCTGCAGCTGCACCCCAAGGGCTGGGCCACACTGCTACGCTGCTCCAGCAACATGGACGACCAGGAGTGGACGTGTGTGTACGAGTTCCAGGAGGGAGCACCTCCCCGGCCGCCGGTCTCCCCTCGCTGCTCTTTGAGGCTCACACACTACATCGAGGAGGCTAACGTGGGCCGTGGCTACATCAAGGAGTTGTGCTTCAGCCCAGACGGACGGCTCATCTGCTCGCCGTATGGTTACGGCGTGCGCCTGCTGGCCTTTGATGAGCGCTGCGCTGAACTGGCGGACTGCATGCCCGTGCGCACGGCGCTCCTCCGTGAGGTGCGCTCCATCTACTCCCACAGcgatgtggtgctcaccaccaaGTTTTCTCCTACGCACTGTCAGCTGGCCTCAGGCTGCCTGAGTGGACGAGTAGCACTCTACCAACCCCACTTTTagcacacgcatacacacaaacGAACATGGACCGAATCTTCTGGCAGATGGTAAGGAGAAGCTAACAGCCCTTAAAGGGAGTGTGTGCTTTCTGGGTTCACAGTGTCAAAGTTTGACTGTGGGTTTGTGTAAATGAGTTGGACGTTTTTAGAAGAAGAGTTCATTGAGTGTGTTCATCGTAATCTTTTCTGATTTCTAAACATGTGTGCAGTAATGAGAGAAATAGCCATTAATCTTTACTCACAGTGCATCTCTCTGTTTGGAGTTGCATGCGGAGTGTGAAAGAGTCGGAACCTCAAGGTGCTATAACAGGCTGGCAGGGTTGCGTTTTGTAGTCTTCATGCCTTTTGCTAAGCATATGACCTCACTCCAGTCTTGGAGCCTGGTCTGCCTGTCAAATGCcgacccaccccccccccacccctccgCAGCAGTGTAGTTACTGTCAGTTATGTATGTGTGAAGTAGCACTAAGTGTAAGCAGTGCAGGCTGTTAATAATGTGATGGATGGAGTTTTCTGCATTTTGCCAAAAgttgtttttggtttgtttttaaagcagcacCGTATTCCCACTCGAGCTCTAATAAGAGCTGCTGTTTCCCTATTTCTTACTGGCATGCTGTTTTACGTTTGAAAGGCAGATTTGCCTCCTGTGGACACTAAGGCTATGCCAAAACAGTAAgtgaaagtggcccaaatctgatttccCCAACAAATCTGATGCTTACTTTAGGCTGTAcgcaatatattttaatgtgacCCATATTTGACATTTTTCTTAATAGTTAGCACTGTGCAGCTGACGTGTATGTGCAGagcaattcttaaaaaaaaaaagtttcagttttatcCATGGCAGAACCGTAGGAGCTATGAAGAAGTTCCAGAGGCTGACAACCAGAATAATCACTGAGAATGTGCTCGAgctctctgtaaaaaaaaaaaaaaaaaagcacgtTATTCATCCACAGGCACTCCTGTGGTCTGTGTCCTTAACGTTTTAGCTTTTCTTTTGGCGCTACAGCTGCGTTTTGTGGCTGTGCTctgccattttattagaaacactgagcCATTGCTACAAAATCCCGTTAGCTCATCATCCTGCTAATGAAACCCTCATTCACCGCTGTCGTCCATTTTCTCGTTTACTCACAGCCTTTTGTTTTTCACCTTGAGTCACATTGCCGCAATTCTCAAATCTGAATATcatatttattgtgtgttttctgaCATTTTTTACTGCCTCATAGTTTTCAGATCTGGGTCGCATATGACAGAAAAGATCAGATTCGGGACATTTTTACCTGCTGTGAAACCTATGGAATGTAGCCTAATTAACTCATGTTTTTGGGATATAATTTGTAGATAGTTTAAGCAGAACGCTTGTGCGCATGTGTGCCTCAGTATGCGTTTGAGTATGTGTGTCTAATATAAGATAAGCTAGCTGCAGGTAATTGATTCTTggttgaaagagagagagagagagagagagagaaaggtgatGAGCCGGTGAAGAGGTCCTCCTCCTGCTGTCTCTCTTTAAATACACGTAAAcacatgcgcgcacacacacaaacaattaaCTTATAAACTGGACAGGGACAATCAACATTGTTGCCTAAACCTGAAATCCTCTGGCAGATTGTGTTTTTCATGCCACCTCAGAtgaatgtttgtatgtatgtatctatgtacGTATGGCTGGCTGGATGGATGTAtctatgtgtgtttgtatgtatatatgtatgtatgtataggtgtatgtgtgtgtgtgtgtgtgtaagcacgCTGACTATGGACAGTTCAGAAGCACAGCTATGAGATTCTAAGCGCTGCAAAGACTGTGGGAGACTGAGCTTTTGATGCACCAGGATGTAATGGTTAGATGAGTGTTTTTTAGACTGCTTGGTATCTTAATTTCGCCTTTAAGAAGAGACACACAGAGGATGGTCAGTTCTTCTCTTACTGGCAATGTTTGGATCCTGCTCATGTTATTCAACATGCGTAACATCTGGAAAGAGGGAAATAAGGAAAAGGGCCACAGAGGGATAGAACATTCCTTTGTTCAGCTGTGCTTTCACCTGCTCAATCACAAAATGATTCATGTTAGTACTAAAATACCACTAAGGATGCAGagattcaaataaataaagagttttttttcacTTGCTA

Function

symbol description
wdr32 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF10 (DDB1 and CUL4 associated factor 10).
dcaf10 Predicted to be involved in protein ubiquitination. Part of Cul4-RING E3 ubiquitin ligase complex.

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 10

GO: NA

KEGG:

id description
K11802 DCAF10; DDB1- and CUL4-associated factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236406.3 True 3949 mRNA 0.50 7 24447813 24457455

Neighbor

gene id symbol gene type direction distance location
LOC103039233 NA coding downstream 19514 24405907 ~ 24428299 (-)
LOC103038918 LOC108441763,LOC108263187 coding downstream 46348 24328083 ~ 24401465 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding downstream 192674 24137822 ~ 24255139 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding downstream 356304 24079867 ~ 24091509 (-)
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding downstream 407445 24030874 ~ 24040368 (-)
pomk pomk coding upstream 1876 24459331 ~ 24462707 (-)
LOC103040598 zgc:123321,LOC108441758,LOC107690194,LOC107733692,LOC107582562,LOC107708471 coding upstream 9725 24467180 ~ 24472883 (-)
LOC103041609 LOC105419135 coding upstream 17499 24474954 ~ 24495039 (-)
LOC103043058 loxl3b,LOC108441751,LOC108263239,LOC107708481,LOC107678544,LOC107690148,LOC107733697 coding upstream 74183 24531638 ~ 24556940 (-)
pank2 pank2,LOC107733768,LOC107690147,LOC107708483 coding upstream 100198 24557653 ~ 24565649 (-)
G218829 NA non-coding downstream 277039 24167395 ~ 24170774 (-)
G218820 NA non-coding downstream 310818 24134185 ~ 24136995 (-)
G218793 NA non-coding downstream 374679 24070915 ~ 24073134 (-)
LOC111195998 NA non-coding downstream 392691 24054267 ~ 24055122 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding downstream 421924 24022837 ~ 24025889 (-)
G218927 NA non-coding upstream 42218 24499673 ~ 24507296 (-)
G218929 NA non-coding upstream 52190 24509645 ~ 24509912 (-)
G218930 LOC103042321,LOC108441753 non-coding upstream 53919 24511374 ~ 24583080 (-)
G218938 htra2,LOC108441752,LOC103144266,LOC106918274,LOC105899646,LOC106963707 non-coding upstream 68809 24526264 ~ 24527579 (-)
G218986 LOC108263817 non-coding upstream 197437 24654892 ~ 24657410 (-)
G218781 NA other downstream 390936 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 590306 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 598013 23835779 ~ 23849800 (-)
march8 march8 other downstream 790827 23454175 ~ 23656986 (-)
G218545 NA other downstream 1601608 22844833 ~ 22846205 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 225782 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 760694 25218149 ~ 25226250 (-)
G219510 NA other upstream 2015173 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2281349 26738804 ~ 26757592 (-)
G219671 NA other upstream 2369573 26827028 ~ 26827527 (-)

Expression


Co-expression Network