LOC103040903


Basic Information

Item Value
gene id LOC103040903
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24495653 ~ 24507303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236408.2
ACTGTTCAAAGGTGAGGTAAGGAGGAAACGGCGCACTCAGATAATGCTAAAGTTAGAGATACCTGCGTGAACTTCTTTCCGCAGTGaatttactataaatatataaatatatacactcaaGATAATGTCTAAAAGGGACTTCATCCCACCGGATTTTCTCCGGATGCAAGAAAACGTGCGCATCATGCAGACCCATGAGGCAGTGGTGGACATAATCCATGGCAGAAGTGTAGGATATAATCTGTTGGATGCATTTACATATGGACTAGGTCTAGGTAACTACCCTTCAGAGTTTGTGGAGTATGTGGAATCTTCAGATGATGattataatgatgatgatgatgatgatgacgaccATTTTGGCAGCCAGAGCAATAGATACTGTGGTTTCACTCCAAACTTTCTGGATAGAGGAATTCCAAAAACACTGCCTGCAATAGCCTTTAGATCCGTCAAAGGTGTTTCTCCAGAGgaggcTGCAAAAAATGCTAAAGAACTGGTAGATGAAGAGGAAAAACTTAAGAtgaaagcagagaaaaaaaaacagaagaaaatgAGGCAGCGTGAAAGAAAACGGCTtgaaaaaatagagaaagaaaatgcagataaaagtaaaaagGTTAATACTGCATCAGAGAAGCCTGCAGAAAAAGAGtataaaaagaagaataaaacaaataacagtgCACCCGTACCACCTGAACCTGACCCTGGCCCTCAGACCCATGAAGCTTCTGAAAACAGTGACTGTTCTGATGAAGAAGATGATCAGGAGAGTGTAACTGAGGAACTGGAGGAACTAGATATGAACAGCTGTTTTGTGACAAATGCAGCAGCCATCGCTAAGCGCAAAATAGAACAGAAACCTAAACCTGACaggaaagacaaaaaagaagagaaTCTCAGGAAACATGGGGcaataaaaacaagaacaaaagagCCCCACAATCAGccTAAACAGACTCATGAGGAGAAGGAGTCGTCGGGAGAGACAGTTGACTTTGTCACAAAGAGCCTGGTTCTAGCAACAATGGGAAACGATTATGCTGCAGCAGGCAATTTGGAAATGGCTGTGATGTATTTTACTGATGCTATTAAACACAATCCTAAAGAGTTTAAGTTGTTTGGAAATCGTTCCTTCTGTTATGAGAAAATGCAGCAATATGAGAGAGCTTTAGCAGATGCGGATATTGCTCTGTCATTAAGCCCAACATGGATTAAAGGACTCTACAGGAAAGGAAAAGCACTGGTTGGACTTAAGAGATACTATGATGCTAGTCTGATCTATAAGGAAGTTTTAAAGTTGGACAGCTCCTGTACTGACGCTGCTCAGGAGCTGATGAGGGTACAGATAATGCAGTTAATGGATATGGGCTTCACTCGAGAGCAGAGTTCAAACGCGCTGATTATACACGGAACCGTAGAGAAAGCCTTAGAAGCTCTATCTGGCCTGCAGGGCAGTATTGTAGCTAGCCCTGTGCCTGCAGAAGAGGAATGGGAATTTGCAGAAAGAAAGCAGCCTTCTAAAGTCCCACTCAGAACAGTCTCTCAGAACCAGCCTAGACCCAACACAGCAGTCATGCCCACTCCCCCAGAGCTGTTTCCCATCTGGGTTGGGGACTTAGTGCCTGAAATATCGGAGTCAGAAATATATGAGCTGTTCCGTGTCTTTGGACCAGTGtacagtgtaaaagtactgcggGCAAGACGCTGTGCTTTTGTTAACTTCACCAGCAAAGATCACAGTGAAAAAGCCATCCGAGAAATGCATGGTTATGCTGTTGCAGGGACTACTCTTGTGGTGCGCTATCCTGACAGACTCCACTCACATCTTGGCGCATCCAAAGCTGCAGCAACAGATACTGCAAAAGTTAATAAATTGCCTGACGAGTGTTATTTCTGGAGGACGACAGGCTGCATTAAGAATAATCGCTGTTCCTACAGACATGTGCCGGAGCACAAGGGCGTTGATCGAGCCAAAGCTAAGTTTTGATTGAGCTCTCTGATgcaaccagagaaactgatgttAATCCAAGGATCACAATTATTCATATTCTATCTCACATTGAGTTAAGAGACCTAATTAGTGTGTACACAATATACATACAGGGTGAATACACTAAAGTTTGCAGTACcctcttttatttcagaaacaaaagGGAAAATTACATATCTGAATATTCCAGCAAGCATTGGGTTAGGGGGTTGGGTTATCGTCTTTTAGGCTGTGTCTGGGACATGGCCGCCATCTTAAAAGGTGCCatattttgtttctgaaataaaaggttGTCCATCAATTTTTGAGTCACCCTGTTCATACCTCTACGAAAGGAAGAATTATCGGTAATGGATGCTGTTTTGCTGAGATGCCCAGATTGTTTCCTTGACTGCAACAATCAGTATTGATTTAAAGGCCAAAATGTTCatgttttgtttgatttcaTCTTGATGGCCTTTTCAACTGTGTGGGCCAACTTTGATCCATATACCATATTTGTaatctccatttttttcttttaaaacaagTTCTTGAAACAAACCTACATTCTGTGTTCTTTGCCATCAGTAATtggattaaaagaaaaaaaagctccCTGCAGATGTTTGAGTTCTTGTGCTTTGAATGTTGCTGACTTTATTTTTCTATGAACATTtggttttaaatacaatttgtcttaaacattttactttacactTGTATGTCTTAAATCAGAGAATGTTTTGACTTGTTAGTCTTGATTAGGCTTTGTAAAGGTTTTCCCCTTGTTTTGTATTCCAGTTTTCCCCCCTCCTCGTCTCCTCCGGTGTTGTGATTTTATTCATGGTTCAGGAATATTAACCCCACTATAAACAAgtgaaagacttttttttttttttttttaaccaagtgtCATAAACATGTCAATtgtaatttttcattttgtttaataattatCAACTTTATGTATGAACCATGTGCTACCCCTTTTCATTTAATTACACAAATCAACACCTTAA
>XM_007236409.2
ACTGTTCAAAGGTGAGGTAAGGAGGAAACGGCGCACTCAGATAATGCTAAAGTTAGAGATACCTGCGTGAACTTCTTTCCGCAGTGaatttactataaatatataaatatatacactcaaGATAATGTCTAAAAGGGACTTCATCCCACCGGATTTTCTCCGGATGCAAGAAAACGTGCGCATCATGCAGACCCATGAGGCAGTGGTGGACATAATCCATGGCAGAAGTGTAGGATATAATCTGTTGGATGCATTTACATATGGACTAGGTCTAGGTAACTACCCTTCAGAGTTTGTGGAGTATGTGGAATCTTCAGATGATGattataatgatgatgatgatgatgatgacgaccATTTTGGCAGCCAGAGCAATAGATACTGTGGTTTCACTCCAAACTTTCTGGATAGAGGAATTCCAAAAACACTGCCTGCAATAGCCTTTAGATCCGTCAAAGGTGTTTCTCCAGAGgaggcTGCAAAAAATGCTAAAGAACTGGTAGATGAAGAGGAAAAACTTAAGAtgaaagcagagaaaaaaaaacagaagaaaatgAGGCAGCGTGAAAGAAAACGGCTtgaaaaaatagagaaagaaaatgcagataaaagtaaaaagGTTAATACTGCATCAGAGAAGCCTGCAGAAAAAGAGtataaaaagaagaataaaacaaataacagtgCACCCGTACCACCTGAACCTGACCCTGGCCCTCAGACCCATGAAGCTTCTGAAAACAGTGACTGTTCTGATGAAGAAGATGATCAGGAGAGTGTAACTGAGGAACTGGAGGAACTAGATATGAACAGCTGTTTTGTGACAAATGCAGCAGCCATCGCTAAGCGCAAAATAGAACAGAAACCTAAACCTGACaggaaagacaaaaaagaagagaaTCTCAGGAAACATGGGGcaataaaaacaagaacaaaagagCCCCACAATCAGACTCATGAGGAGAAGGAGTCGTCGGGAGAGACAGTTGACTTTGTCACAAAGAGCCTGGTTCTAGCAACAATGGGAAACGATTATGCTGCAGCAGGCAATTTGGAAATGGCTGTGATGTATTTTACTGATGCTATTAAACACAATCCTAAAGAGTTTAAGTTGTTTGGAAATCGTTCCTTCTGTTATGAGAAAATGCAGCAATATGAGAGAGCTTTAGCAGATGCGGATATTGCTCTGTCATTAAGCCCAACATGGATTAAAGGACTCTACAGGAAAGGAAAAGCACTGGTTGGACTTAAGAGATACTATGATGCTAGTCTGATCTATAAGGAAGTTTTAAAGTTGGACAGCTCCTGTACTGACGCTGCTCAGGAGCTGATGAGGGTACAGATAATGCAGTTAATGGATATGGGCTTCACTCGAGAGCAGAGTTCAAACGCGCTGATTATACACGGAACCGTAGAGAAAGCCTTAGAAGCTCTATCTGGCCTGCAGGGCAGTATTGTAGCTAGCCCTGTGCCTGCAGAAGAGGAATGGGAATTTGCAGAAAGAAAGCAGCCTTCTAAAGTCCCACTCAGAACAGTCTCTCAGAACCAGCCTAGACCCAACACAGCAGTCATGCCCACTCCCCCAGAGCTGTTTCCCATCTGGGTTGGGGACTTAGTGCCTGAAATATCGGAGTCAGAAATATATGAGCTGTTCCGTGTCTTTGGACCAGTGtacagtgtaaaagtactgcggGCAAGACGCTGTGCTTTTGTTAACTTCACCAGCAAAGATCACAGTGAAAAAGCCATCCGAGAAATGCATGGTTATGCTGTTGCAGGGACTACTCTTGTGGTGCGCTATCCTGACAGACTCCACTCACATCTTGGCGCATCCAAAGCTGCAGCAACAGATACTGCAAAAGTTAATAAATTGCCTGACGAGTGTTATTTCTGGAGGACGACAGGCTGCATTAAGAATAATCGCTGTTCCTACAGACATGTGCCGGAGCACAAGGGCGTTGATCGAGCCAAAGCTAAGTTTTGATTGAGCTCTCTGATgcaaccagagaaactgatgttAATCCAAGGATCACAATTATTCATATTCTATCTCACATTGAGTTAAGAGACCTAATTAGTGTGTACACAATATACATACAGGGTGAATACACTAAAGTTTGCAGTACcctcttttatttcagaaacaaaagGGAAAATTACATATCTGAATATTCCAGCAAGCATTGGGTTAGGGGGTTGGGTTATCGTCTTTTAGGCTGTGTCTGGGACATGGCCGCCATCTTAAAAGGTGCCatattttgtttctgaaataaaaggttGTCCATCAATTTTTGAGTCACCCTGTTCATACCTCTACGAAAGGAAGAATTATCGGTAATGGATGCTGTTTTGCTGAGATGCCCAGATTGTTTCCTTGACTGCAACAATCAGTATTGATTTAAAGGCCAAAATGTTCatgttttgtttgatttcaTCTTGATGGCCTTTTCAACTGTGTGGGCCAACTTTGATCCATATACCATATTTGTaatctccatttttttcttttaaaacaagTTCTTGAAACAAACCTACATTCTGTGTTCTTTGCCATCAGTAATtggattaaaagaaaaaaaagctccCTGCAGATGTTTGAGTTCTTGTGCTTTGAATGTTGCTGACTTTATTTTTCTATGAACATTtggttttaaatacaatttgtcttaaacattttactttacactTGTATGTCTTAAATCAGAGAATGTTTTGACTTGTTAGTCTTGATTAGGCTTTGTAAAGGTTTTCCCCTTGTTTTGTATTCCAGTTTTCCCCCCTCCTCGTCTCCTCCGGTGTTGTGATTTTATTCATGGTTCAGGAATATTAACCCCACTATAAACAAgtgaaagacttttttttttttttttttaaccaagtgtCATAAACATGTCAATtgtaatttttcattttgtttaataattatCAACTTTATGTATGAACCATGTGCTACCCCTTTTCATTTAATTACACAAATCAACACCTTAA

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236408.2 True 2997 mRNA 0.40 18 24495653 24507303
XM_007236409.2 False 2988 mRNA 0.40 18 24495653 24507303

Neighbor

gene id symbol gene type direction distance location
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding upstream 49015 24429672 ~ 24446638 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 364908 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 518061 23970690 ~ 23977592 (+)
LOC111196020 LOC105007542 coding upstream 526322 23965642 ~ 23969331 (+)
LOC111195965 LOC105007542 coding upstream 533552 23959074 ~ 23962101 (+)
LOC103042321 LOC103042321,LOC108441753 coding downstream 4038 24511341 ~ 24515822 (+)
mrps26 mrps26 coding downstream 10111 24517414 ~ 24520954 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 15508 24522811 ~ 24530192 (+)
LOC111195941 NA coding downstream 72797 24580100 ~ 24585465 (+)
LOC103046402 NA coding downstream 83785 24591088 ~ 24597515 (+)
G218893 NA non-coding upstream 16431 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 34344 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 174061 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 177459 24317642 ~ 24318194 (+)
G218836 NA non-coding upstream 213597 24281705 ~ 24282056 (+)
G218920 NA non-coding downstream 60014 24567317 ~ 24570732 (+)
G218948 NA non-coding downstream 82007 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 282774 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 439421 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 501838 25009141 ~ 25009529 (+)
LOC103046104 LOC108441759 other upstream 28786 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 424027 24064495 ~ 24071626 (+)
G218758 NA other upstream 431865 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 466672 23981135 ~ 24028981 (+)
G218651 NA other upstream 787410 23696577 ~ 23708243 (+)
G219050 NA other downstream 334999 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 654424 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 749647 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 931416 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2693149 27200452 ~ 27236616 (+)

Expression


Co-expression Network