mrps26 (mrps26)


Basic Information

Item Value
gene id mrps26
gene name mrps26
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24517414 ~ 24520954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236415.3
TAAAAAAAGGAGACTCTGTTGCGGCAGGAGAAGCTCTTCCTGTGTGAAAGGTCGTGAAGATGGCGGCCTCGTGCGCAGGGCTGAGGGTTGTGTAGGTCTGCGTGCGGTCTGTCCTCTGCTTTGCTCCAGCAGCTGTTCTGTAGATCTGACTGTAGATCTGACTGAGCGATGTTTCAGGCTGTAGTCCGGAGCCGGACTCCGGTTGTCCGCTTCCTGTCTCCCCGGGCGGGGGTTCTGCTGGAGACGGTCCGGGGCAGAAAGTCCAGAACCGACCCCAAAGCCAAGTCTAAAGCCGGGCGGATCAAAACCCCCTCTCCGGTGGACCCGGTGGAGATGGTGGTCCTGAAGGAGCGCTTCACTGAATATAACCTCATAATGAGAGCGCTCAGAATGGAGTTTAAAGAGGAGATGCTGCGGAAACGATATGAAGAAGAGACCGGTTCTTTGGCAGAGGAGAGAGCCAAGCAGGAATCTGAAGAACACAGATCATTAATGGCCTGGAATGATGCTGAGAACCTCAGACTGAGGAAAATCCGTGAATTACGTGTGCAGAAggaagctgaagctgctgaacaGAGAACGAGAGAGGAAGCATTGTTGCGTCAGCAAGAGTTCGAGAGATATATCCAAGAAAAAGAGATGGAGATCCTGCAGCTACAGGAGGAGGCAAAGAACTTCATTACACTGGAAAATCTGGATGAGCGGATTGAAGAGGCGCTGGACAATCCGAAAAACTACAACTTTGCCGTTAATAAAGCgggcaaaacagaaaaaaggacaATGCTTCAATAAGGGATGCAGACCAATACATTGGGAAGAGACTGAAAATTACGCATGTCTTGTTACTGCAGCAAAAACAACTTTAGGCATTCTGTATACAGTAACAATTGTTTGTTTTCAGAGAGAAAAGGTAACTTGTGGGTAATCTGTACATTGTACGTgctctaaatgttttttgtgcTACGAGTTACACAGTTGTAACaattatgattaaatatgtttattatttgtcAATTTCCAAA

Function

symbol description
mrps26 Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS26 (mitochondrial ribosomal protein S26).

NR:

description
28S ribosomal protein S26, mitochondrial

GO:

id name namespace
GO:0005763 mitochondrial small ribosomal subunit cellular_component

KEGG:

id description
K17405 MRPS26; small subunit ribosomal protein S26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236415.3 True 1022 mRNA 0.47 4 24517414 24520954

Neighbor

gene id symbol gene type direction distance location
LOC103042321 LOC103042321,LOC108441753 coding upstream 1592 24511341 ~ 24515822 (+)
LOC103040903 NA coding upstream 10111 24495653 ~ 24507303 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding upstream 70776 24429672 ~ 24446638 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding upstream 386669 24092177 ~ 24130745 (+)
LOC103042015 LOC108441770 coding upstream 539822 23970690 ~ 23977592 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding downstream 1857 24522811 ~ 24530192 (+)
LOC111195941 NA coding downstream 59146 24580100 ~ 24585465 (+)
LOC103046402 NA coding downstream 70134 24591088 ~ 24597515 (+)
LOC103044475 rab11fip5,LOC108263817 coding downstream 77651 24598605 ~ 24657648 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding downstream 137477 24658431 ~ 24678113 (+)
G218893 NA non-coding upstream 38192 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 56105 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 195822 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 199220 24317642 ~ 24318194 (+)
G218836 NA non-coding upstream 235358 24281705 ~ 24282056 (+)
G218920 NA non-coding downstream 46363 24567317 ~ 24570732 (+)
G218948 NA non-coding downstream 68356 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 269123 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 425770 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 488187 25009141 ~ 25009529 (+)
LOC103046104 LOC108441759 other upstream 50547 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 445788 24064495 ~ 24071626 (+)
G218758 NA other upstream 453626 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 488433 23981135 ~ 24028981 (+)
G218651 NA other upstream 809171 23696577 ~ 23708243 (+)
G219050 NA other downstream 321348 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 640773 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 735996 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 917765 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2679498 27200452 ~ 27236616 (+)

Expression


Co-expression Network