ap5s1 (ap5s1)


Basic Information

Item Value
gene id ap5s1
gene name ap5s1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24794890 ~ 24798599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237253.3
ACACGGAACTTGCGCTGTGAGCTCAGGCTGTGTTGGAGCGGactttttaatgttctttttaaacTATAAATGGTTATAAACACGTTATTGTGTGAGAAAAGactCAGTGATGGTGGTGTGTTTTCTGATCCACACTGTGGGGGCTGTGGGCGCTCTGTCCCCCTGTGAGAGTCGGGTTCTGTACTCTCGGGTTTTCggagtggaggaggaggatgaggagctGAGCGGAGAGCTGGAACCGGAGAAGAGGAGACTGGCTCGAAAAGAGAGACTGGGGGTGGTGGCGAGGCAAGTGAGAAGTGCGGTGTGTCTGAGCCGAGAGGCGTCAGGCAGCGTGTGTGTGGAGGCTGTGCTGGGTGAGGAGGCCGTGGCCCTGGGTGAGGCAGAGTGCGGTGTGTTGTCTTTGGGCCGCGGGGAGCCGTTTGCAGGGCCGAGCGTTGCGCTGTGGCTGGGGGTGCAGGCTATGGCCTTCACTATGGTGTGCCAGCCACATGAGAACCTGCTGCTGGCGGAAGGAACCCTGCGTAACCTCACCCGCCACTGCCTGGAGGAGCTGCGCCTGCTGGGAACTGGCAGTGAGGTGCTGCTAAAAAGTGACCGGGTAGATGCAATGCTCCAGAGACTCCTTCCTCACGGACAGCTCCTCTTCCTCAACAACCGCTTTGCTCAAAACTTGGACAAAGAGCTGTCCAGCTACATGAGCAAATGAGACACCTGGATCAGAGCTATATCACCGGTACAGTGGGCAGAATAAATCAGGTGTTTTGCAGAGCGACTTCAAAACTGGCTTGTGATGTTTTACAAGACGCGAATGAAGAGAGACAGTTCCGTCCAGAATATCCGAAAAAAAGAATCTGAAAAATTCCTTTTGAAGACTGAAAGAAAGTGTTTGAAAGATTGCACCTCAAAGAACTATCTATGCCCAAATGGTCTTCAGAACTGTTTGAAGGGCTGTGGTTGAAGGTTTTTGAAGCAAATTCTAAAGCGTGTTGTTTTTCGTTTGGACAAGTGTTAGATAATAACAGAAGCCTTAAGTGAAAATACAGAACAGAGATCTTCTGATATTCTAAAAATACGTTGTTACATTCAGAGCGGGTGTTTGTGGCACGTTCAGGCGTGAAATAAGCAGAGTGTTGTGTatgctgtgtgtatatatatatatatataatatatatatatatatatattatatatatatatatatataaacgtgtatatgtatgtgtgtgtctgtctcagTGTGCAGTGGAAATCACCTGTTAGTCTCTGATCCTGCAGTCTGATGTGTTGTTGTTCGAGGAGCCAGTGGGTGGCACTGTGTTGTGGTCTTCTGAGCTCTGGAGAACCTCCCTTTGAAGCACAGTTACCAGGGTAACACTTCATATCAAATAGTAAGGCTGTGTTACTTCAGAATCTAATAAATGGGATGATCAACa
>XM_015602442.2
atgattccctatgtgtttcttcatagtctggaggacttcagtattcatttatactgCAGGAAAAACTAAACGTGGTAGTGTCAAATCACGGCTTTTTTAGCTGAATTTGGAGGGAAAACAGCGAACCTGGCAACACTGCGGAGGGCGGCTCTCAGTCACactCAGTGATGGTGGTGTGTTTTCTGATCCACACTGTGGGGGCTGTGGGCGCTCTGTCCCCCTGTGAGAGTCGGGTTCTGTACTCTCGGGTTTTCggagtggaggaggaggatgaggagctGAGCGGAGAGCTGGAACCGGAGAAGAGGAGACTGGCTCGAAAAGAGAGACTGGGGGTGGTGGCGAGGCAAGTGAGAAGTGCGGTGTGTCTGAGCCGAGAGGCGTCAGGCAGCGTGTGTGTGGAGGCTGTGCTGGGTGAGGAGGCCGTGGCCCTGGGTGAGGCAGAGTGCGGTGTGTTGTCTTTGGGCCGCGGGGAGCCGTTTGCAGGGCCGAGCGTTGCGCTGTGGCTGGGGGTGCAGGCTATGGCCTTCACTATGGTGTGCCAGCCACATGAGAACCTGCTGCTGGCGGAAGGAACCCTGCGTAACCTCACCCGCCACTGCCTGGAGGAGCTGCGCCTGCTGGGAACTGGCAGTGAGGTGCTGCTAAAAAGTGACCGGGTAGATGCAATGCTCCAGAGACTCCTTCCTCACGGACAGCTCCTCTTCCTCAACAACCGCTTTGCTCAAAACTTGGACAAAGAGCTGTCCAGCTACATGAGCAAATGAGACACCTGGATCAGAGCTATATCACCGGTACAGTGGGCAGAATAAATCAGGTGTTTTGCAGAGCGACTTCAAAACTGGCTTGTGATGTTTTACAAGACGCGAATGAAGAGAGACAGTTCCGTCCAGAATATCCGAAAAAAAGAATCTGAAAAATTCCTTTTGAAGACTGAAAGAAAGTGTTTGAAAGATTGCACCTCAAAGAACTATCTATGCCCAAATGGTCTTCAGAACTGTTTGAAGGGCTGTGGTTGAAGGTTTTTGAAGCAAATTCTAAAGCGTGTTGTTTTTCGTTTGGACAAGTGTTAGATAATAACAGAAGCCTTAAGTGAAAATACAGAACAGAGATCTTCTGATATTCTAAAAATACGTTGTTACATTCAGAGCGGGTGTTTGTGGCACGTTCAGGCGTGAAATAAGCAGAGTGTTGTGTatgctgtgtgtatatatatatatatataatatatatatatatatatattatatatatatatatatataaacgtgtatatgtatgtgtgtgtctgtctcagTGTGCAGTGGAAATCACCTGTTAGTCTCTGATCCTGCAGTCTGATGTGTTGTTGTTCGAGGAGCCAGTGGGTGGCACTGTGTTGTGGTCTTCTGAGCTCTGGAGAACCTCCCTTTGAAGCACAGTTACCAGGGTAACACTTCATATCAAATAGTAAGGCTGTGTTACTTCAGAATCTAATAAATGGGATGATCAACa

Function

symbol description
ap5s1 Predicted to be involved in endosomal transport. Predicted to act upstream of or within double-strand break repair via homologous recombination. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5S1 (adaptor related protein complex 5 subunit sigma 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19024 AP5S1; AP-5 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237253.3 False 1436 mRNA 0.47 4 24795057 24798599
XM_015602442.2 True 1494 mRNA 0.48 4 24794890 24798599

Neighbor

gene id symbol gene type direction distance location
cdc25b cdc25b,LOC108417292 coding upstream 7550 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 116777 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 137242 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 197375 24591088 ~ 24597515 (+)
LOC111195941 NA coding upstream 209425 24580100 ~ 24585465 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 386035 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 427842 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 512244 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 541865 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 618781 25417380 ~ 25430559 (+)
LOC111196006 NA non-coding upstream 2069 24790077 ~ 24792821 (+)
G218948 NA non-coding upstream 153843 24589310 ~ 24641047 (+)
G218920 NA non-coding upstream 224158 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 315668 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 333581 24459393 ~ 24461309 (+)
G219067 NA non-coding downstream 148125 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 210542 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 242638 25041237 ~ 25041789 (+)
G219102 NA non-coding downstream 285858 25084457 ~ 25084856 (+)
G219141 NA non-coding downstream 335354 25133953 ~ 25138947 (+)
LOC103046104 LOC108441759 other upstream 328023 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 723264 24064495 ~ 24071626 (+)
G218758 NA other upstream 731102 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 765909 23981135 ~ 24028981 (+)
G218651 NA other upstream 1086647 23696577 ~ 23708243 (+)
G219050 NA other downstream 43703 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 363128 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 458351 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 640120 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2401853 27200452 ~ 27236616 (+)

Expression


Co-expression Network