cdc25b (cdc25b,LOC108417292)


Basic Information

Item Value
gene id cdc25b
gene name cdc25b,LOC108417292
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24779609 ~ 24787340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237254.3
TTTCTTTTCTCTCAGTGGAGTCAGAAAACagtcagagagagtgcacaggaAGTGGCAGCTCTCTGACTAAAATCGAAGAACATGAccttttaaattgtgtttttatttatttggcttttttttgCGCTTTCGTGCAAGCGGGGCAGTTCTGTGTGTCGGCGTGATGAACCGCTCTAAAGCCTAAGAGCAGAGTTTCTCCTCTCCGGGACAGAGAAGATAAAAGAAGATCGAGAGAGAGGTTTATATGGATGGGGCCCCGTCGAGTACTTGCATGCTAACCTAACCTAGCCAGTCAGCTAACAAACACGCTACGCTAGCTAAAGCTTCCTCTCAGGCTAATCCCGTCTGCCTCCGGCTAGCTTTAACTCTTTTATCGGCTCCAGTTTAAATTCGGATTGGATTTTATCTTATCAGTTTTATCCGCTGTGAAAGTGTAAAAATGGAAATCGACACAGTTGTGAGTGACTTTAGCCCTGTCAGTGATGATCTGTGCACTGAGCCCAACTCGATCCCCAGGCTCTCCAGGCCGTCTTTCCCCGAGCTCCGGACTAAGGGCTCCCCCTGCATCAAAAACCTTTTCTCCCCCGGACCCGCTGCTGTGCTTTCCCCCGTCACAAACCTGGCTCTCAACATGGACAACCTCGCTGTTCTTGGAGGGCAATGCGAGACGCCTAAACGGAGGAAACCCATCATAAAGATTCCTTCATTCGCCTCCGACACTTCATCTGATGCAGGTCTTGGTATGGACTCTCCAAGCCCCGTGGACCCAGTGGATGCAGAGCAAAAGTTTGAAATGGCCATACAGAATGCAACCAGAGTGATCAATGAaaaaatgCCCATTCGTAGGATAAACTCTCTACCACTGCAGTTATTGGGTCACAGTCCAAATCTGAAGTGTAAAGATTCTGATCTGCCGAGGTATGGAGTCTTCAGTCAGACATCCAGCCTGGCTGACAAAGAGAACCTGCATGAGaattttgaaTTTAAGAAGCCCACCCTGCCTGTATCCCGCTGTCGACTGCGTTCAACTGGGGAAGGAAAGGAAGCTTTCGCTAGCCGTCCCAACTCTGCACCTGCTTTAATGCTTTCCCCTCCCTCATTCAGTCCACTAGCTTCACCTGATGGCAACAGTCCCTTTGTACTGCGTCGTGTATCACTCCCTGGCtttcatgatgatgatgacgacgaTGGCTTCCTGGAGGTACTTGATGACGTAGAGACGGACTCTGAAGTGCCTACAGGAATGGCCAGTCTGCTCACAGCTCCTCTTGTGGCAGATCAAAGCATGGACAGTACATCCAATTCGCCTGTTAGGTGCCGGCCACGAGGGTTGTTCCGCTCTCCCTCCATGCCAGTAGGTGGGCGTGCCGCACTCAAGAGGCCTGATAGGCCCAGAGACGAGAACACACCTGTCCGTGTGAAGAGGAGGCGGAGTGTGGCAGGGTCAAATGTTTCGCCTACAGAGCAGGATGATTCCCACCCTCAACAGGTACAGCGCTCAAAATCGTTTAATCACTCTGAGATCGAGAGACTGTTGGACACTGACCCCAATAATGTGATTGGAGATTTTACCAAAGCCCCTGCTCTCCCCACAGTGTCTGGAAAACATCAAGACTTAAAATACATCACTCCAGAAGTTATGGTTGCAGCAATGAGTGGCCAATTCAGCGATGTGGTGGAAAGACTGTTCGTCATTGACTGCCGCTATCCGTACGAGTTTGAGGGAGGACATATCAAGGGAGCACTAAACCTGCATCTGGAGGAGCAAATTGAGGATCGCTTCTTCAGCCAGCCCTTCCTTCCACAAAGCCCAGACAAACGCGTGTTGCTGGTGTTCCACTGTGAGTTTTCATCAGAGCGTGGCCCACGAATGTGTCGTTTTGTTCGCGAGAGAGATCGTGATCTGAATGAATATCCCAACCTCCATTACCCTGAACTCTACGTACTGAAAGGAGGTTACAAGGACTTCTTTCCCCTGCACAAGAGAGAATGTGAGCCTCAAGACTACAGGCCCATGGTTCACGAGGACTACAAGGATGACCTGAGGAAGTTTCGTCTGAAGAGCCGCACGTGGGCAGGAGAACGCAGCAAGAGAGACATGTACATTCGTCTCAAAAAGCTTTGAGGCATATATGGACATACACTCAGGTTTACCATCGAACTCCCACACACACTGCCTTCACACATGATCAGCCTGTAGCGGTCATCTTCAGGATTGACAGTATTGCTAAGTTAGGTGCTGCGTAACGTTTACTGCCATAACTCAACCACACACTGCTTCCCTGCTGCCCTCACTCCAAAACGAATATCACTGCCAtagtttcttattttctttctgcccctgttccattttaaacatactaaATGATTGCGTGTGAAATTGAAGACCCAAAAGCACTTACCTTGTTATTTTGGAGTGCTTGAAATTGCTTTTATTTCCCTGCTTTTTCTTTTGTGATTTGCCACCCTGCCCATTTAGGGATTGAGCCatatgcttattattattattatattattattattatattattattattattattattattattatttgcacagCTAGCCACTGTTTAATTGCCCATCTTATGAATTATGTAAACCCTAATGTATAACTTAATATAGATAGTTTTAAAGAGaggattttactgtttttttggtaaagcttttaaacatttcagaGTATGTACAAAGACCTGATTGAAGAGTATTGGTGAAAGTTGGCTGCTTTGCACTACTATATTTGGTCTTCAGTCTCCTGTCTGGGATGAGATTTTAGGTTTTCTGATCCCCATATTTTGAGATTTTCATTAAGAAGTGTGGGGCTGTTTGTATATGGCTTAATTCACTCAGGCCTGGCTGATTTCTGCTGGTCAGCTGGAGAGAGGACCTCTAATCACCAAAGTGTTCAGCAATAAAACCTGCCATTTCATTAGgactttgattttatttttatatatttttttacattacataatgTGATGTCCCCCACTTCTTAAATcctaattgtgtgtgtgtaatctgcTGTATTGAAtctttgaacatttttttggCCATGTTTGAgtcagtgtgtatgtgagatTTGGCTGTGTTGCTGCAGCTCGGCGAATAAATGACTAAGCAGA

Function

symbol description
cdc25b Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within positive regulation of mitotic cell cycle; regulation of G2/M transition of mitotic cell cycle; and regulation of mitotic cell cycle, embryonic. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including DEL; anterior neural keel; axis; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive polycystic kidney disease; cervical cancer; endometrial cancer; prostate cancer; and urinary bladder cancer. Orthologous to several human genes including CDC25B (cell division cycle 25B).

NR:

description
PREDICTED: M-phase inducer phosphatase 2

GO:

id name namespace
GO:0009794 regulation of mitotic cell cycle, embryonic biological_process
GO:0000087 mitotic M phase biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05866 CDC25B; M-phase inducer phosphatase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237254.3 True 3125 mRNA 0.46 15 24779609 24787340

Neighbor

gene id symbol gene type direction distance location
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 101496 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 121961 24598605 ~ 24657648 (+)
LOC103046402 NA coding upstream 182094 24591088 ~ 24597515 (+)
LOC111195941 NA coding upstream 194144 24580100 ~ 24585465 (+)
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding upstream 249417 24522811 ~ 24530192 (+)
ap5s1 ap5s1 coding downstream 7550 24794890 ~ 24798599 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding downstream 397294 25184634 ~ 25192379 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding downstream 439101 25226441 ~ 25241001 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 523503 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 553124 25340464 ~ 25406863 (+)
G218948 NA non-coding upstream 138562 24589310 ~ 24641047 (+)
G218920 NA non-coding upstream 208877 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 300387 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 318300 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 458017 24318267 ~ 24321592 (+)
LOC111196006 NA non-coding downstream 2737 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 159384 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 221801 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 253897 25041237 ~ 25041789 (+)
G219102 NA non-coding downstream 297117 25084457 ~ 25084856 (+)
LOC103046104 LOC108441759 other upstream 312742 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 707983 24064495 ~ 24071626 (+)
G218758 NA other upstream 715821 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 750628 23981135 ~ 24028981 (+)
G218651 NA other upstream 1071366 23696577 ~ 23708243 (+)
G219050 NA other downstream 54962 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 374387 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 469610 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 651379 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2413112 27200452 ~ 27236616 (+)

Expression


Co-expression Network