itga9 (itga9,LOC107679186,LOC107688464)


Basic Information

Item Value
gene id itga9
gene name itga9,LOC107679186,LOC107688464
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32779544 ~ 32905463 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237268.3
CGCTCGTGCGCAGCAGCACAGGCTGTGTGTTTGGAGCGCGAGCGCACTTACCGCCAGCAGCGAGCAGCGCGAGGAGCGGGTCCAGCGGTCCGCGCGCAGATGATCGGACTAATGCTCCGGAGCCGCGGCGGGGTTTCACTCAGCTCCACAGCCGCGCTGCACACCGAGCTCAGCACACTCCTCAGAGTGACGTAGTTTACATGCAGCTCTTTCTGCGTAGTTTAGGGGGTCGTTATATGTAGTTTGGGGGCTCTGCGTATGTAGTTTAGAGGGttttatgtagtttgttttttAGATGTAGTTTAGAGGGTCTGTATATGTAGTTCTGGGCTCTGTGTATGTAGTTTTGAGGGGTTTTATATGTAGTTTTTGGGGGTCTCCTACACTAAGACAGGCGTTGTTACCGTTTGGTTTTTGAGGGCTCGCGCTGAGGATGTGCGGCAGGATGAGCCCGCTGTTCACGCGGAGCAGAGGACTGCTGGATGTGatctgtctgtatctgtctgtgaCCGTGGCTTACTCTTTCAATATCGACCTGGATCACCCCGTGGTGTTCCGTGGACCGCGCGATGCCTTCTTTGGATACTCGGTTCTTGAGCACTTCCATGACAGCACGCGCTGGATTCTGGTAGGAGCTCCCAGGGCTAACTCCTCCTTCAGCAGCTCAGTACACTCTCCTGGAGCTGTCTATAAGTGCCGCATCCACAACAACCCGGAGCGACGCTGCACAGAGGTGGACCTGGGCAGAGGGAACAAGCAGAGGGAGTCATGTGGGAAGACGTGCCAAGGGGACCGGGATGATGAGTGGATGGGGGTCAGTCTGGCAAGACAAGATAAACCAAATGGCAAAGTTCTGGCCTGTGCACACCGCTGGAAAAACGTCTACTATCAGTCCGAGTACATCCTACCCCACGGTTACTGCTCTGTAATCCCACCCACGTTACAGGGCCGGACACAAGCACTCATTCCATGCTATGAAGacTATAAGAAAATGTATGGGGAGGAACACGGCTCGTGCCAAGCAGGGATAGCGGGTGTTTTCACGGAGGAGCTTGTCGTGATGGGAGCACCTGGATCGTACTACTGGACCGGAACAGTGAAAGTGTTCAACATAACCTCCAACACGCAGTACAGCCTCAACAAAGATGATCTGACTTCTCAGAGATACAGTTACCTGGGTTACGCAGTGACAGCCGGACACTTCTCCTCTCCAACAACCATAGATGTAGCTGCTGGAGCCCCTCAGGACGGAGGTGGAGGGAAGgtttacatttttaaaactgagGGAACGTCTCTAGTGAAGATCTTTCAGGCCTCAGGGAAAATGATGGGCTCTTACTTTGGCTCCTCAATGTGTGCAGTTGACCTGAACGCAGACGGGCTTTCGGACCTGCTGGTGGGGGCACCCATGTTTAGCGAGGTCCGGGATGAGGGCCAGGTGTCTGTTTATCTCAGCAGGGGCAACGGAGTGATGGAAGAGGCTGAGATTTTGAATGGACAAAACTCTTACAATGCCCATTTTGGAGAGTGTATCACTACCATTGGTGACATTGATGATGATGGTTATCAAGATGTGGCGATAGGAGCTCCTAAAGAAGATGAGTACAGAGGTGCAGTCTACATTTACCACGGGGACGCTACGGGAATAGTCAGCAAGTACTCAATGAGGTTGTCTGGGCGAAGCATCAGTCCAAATCTTCAAATGTTTGGCCAGTCAATATCCGGCAGTGTGGACATGGATGGAAATGGATATCCAGACGTGACAATCGGTGCGTTTATGGCAGACAGTGTGGTTTTATTAAGGTCCAGACCAGTAATCACAGTGGACGTCTCCATCTTCCTGCCAGCCTCTATAAACATCACTGTGCCTCAGTGTCACGAGGGTCCTCAGCACCTCAACTGCTTCCATGTCACTGTGTGTATGAGCTTCCACGGAAAACATGTGCCGGGACAGATCGAATTGCTGTACAATTTAACAGCTGATGCAGATAAACGACACAAAGGCCTGCCGTCCCGAGTCTATTTCACCAACGGTGGAGAACAGACTGGCGTTGTGAGTCAGCTTTTCAGTCTCAGCGTCCATCGCCAGGCTTGCCACAAGCACACGGCCCACATACGAAAAGAAGTGAAGGATGTATTTTCAGCCATTACTTTCGAGGCAGCGTACAGCCTGGGGAAGCATGTTCTGGATGGACACCATGAGCACGAGCTTGCTGCACTCACGCCTGTCCTCCGatggagaaaaggagagaagatCGCTGCCAAGAATGAGACGTGGTTTGAGAAGAATTGCCTGTCGGACGACTGCGCCGCTGACCTGCGGCTGCATGGGAAACTGCTTCTTTCTGGGCATCACATCAGGCCTCACCTCGCCCTGGGCGGAGTGAAAAACGTCTCCCTTAACTTGACGATTTCCAACGCTGGAGATGACGCTTATGACACCAACATCTACTTAAACTTTTCCAGGGAGGTTCATTACATCAACTTTCTACAGAGGGAAGAGAAGGGCATTTCCTGTGAGCTGGTTCAGCTGGACTTCCTGAAGTGCAGTGTGGGATTTCCTTTCATGAGAGCGCAGACTAAGTACCATCTGTCTGTACTTTTTGACACAAGTCATCTGTCTGGTGAAAACGAGACGTTGCTATTTTTAGTACATGCCAGAAGtgCAAATCCAGAGCATGAGAACAAACTACATGACAACACCTTGGAACTGTCAATCCCGCTGGTGCATGAGGTGGATACAACAATCACTGGGGTGACGATTCCCTCTTCGTTTGTGTACGGTAACTCTATTGACCCCTCCCGCTTTGTTCAGCTGGAAGATTTGGAGTGCAACTTTCAGCCGCTTAACTTCACCTTCCAGGTAATAAATAACGGGCCCAGCAGGCTGCCTGGCTCCACTGTGGAAATAAGGATACCTAACCGACTGGTCGGCAACGGGGCAGACATGTTCCACATCATAGATACACAGGTGGCTGAAGGTCGAGGGAACTGTACGTGGCACAAGAACCCCACGCCGTGCACCGTTCCTCAAGACAAAGAGAGCATTTTTCACACcatctttgccttcttcactaaATCTGGCAGAAAGGTTTTGGACTGTGACCGGCCAGGCAGAGCCTGCCAGACTATCTCCTGTAGTCTGGGACCACAAGCTAAAGAAGAAGCTACGAGTATAGACGTGCACGTTCTACTGAACACTGAAATACTGACAAGAGACAGTTCCTCAGTCATCCAGTTTGTCACACGGAGTCATGTTCAAGTGGACCACCGTGCTATGGAGGTTTTCGGGGGTCTACCAGAGGATGTTTCTCTGGTGTTTGAGGCTCTGCACAGTCAGGAGCCCAGGGGTTACGTGGTGGGTTGGATTATCGCCATCAGCCTGCTGGTGGGAATCCTCATCTTCCTCCTGCTAGCTGTGCTGCTCTGGAAgATGGGCTTCTTCAGGCGGCATTACCGGGAGATCATCGAAGCAGAAAAGAACAGGAAAGACAGTGACGAGAGCTGGGACTGGGTCCAGAAGAGCCAATGAGAGAtggaaatgaaatgtaaatgttcATAGAAGATCCAATAAGCTGCTGCCTTCACCATGGCCATGCCCTAAGACCCAAACCCTCCAGTCTTCCATATGTGGAAGAGAAGAATTTTCTGCAGATTTGACACTTTTTTCTGCAGACGGTGATCAAACTGACACTGGAGTCGACAGTGCGACTCACTAGAGAAGAGACTCAATAGTGGAATTCCATTGATCCGAGTTGGGATGGCCTCCTGCCAGTCAGACTGGAGAGATGGAAGGAGACTAAGGAAACAGACACTTCCACTGAAGGATATGGATAATGTGTCAAAACTAGCAGACAATAAAAACCCTCAGGGCGCTGATTATGAGCAaagatctatttttttatatgtattccATAATGTATAGATGAGAGCTTCAGAAGGCCTTGatgattatttgtttttgttggcCTTCAGACATTGATGTCGATGTTGATGTTGAAAGCACTGATGATGACTGTTACACGATGAAGAGCACACTCACGCTCTTTACTCAGATCTTCCTTTCACAGAACAATGCTCAACAATGGAACATTAAAAAGTGGATGCATTTTATATGAACCATcacagaaaaaagacaaaagaaatgtCTTGAAATGAAGGGTGGTGCCAactttatttgtgttgtttctCATCTGGTTTCccagaaaaaagaaacagacagtTTTGACAGTTGAAACAGTAAACCAGttgtcaaagaaaaaaaaaacagggagtATTTGATCAATGATTTGTCAGAGCTATCAATGCCAAATCTCATTATCAGCCTGCAGTTTTGCACTGGACGACACTCAATTTGATAAAGATCTTGTTACttctattttaaaagtgttttttttttttctttttttgaaattgtatttttctgTACATGAAGAATAACATAGATAACTTTTAGTTGCAGTGAAGCACAAAAACGCCTTAATGCCAAAGCCCAAAGCCCAACAGTTGtccttatatatttatatcgaTTTTTTGCATTCATATTAGATATGCGAGTCCTAATGGTCAATCAGGTCTAATGGATTAATAAAAGGGATTCAATTGAGAACTCTGCTACTATCAATAGTCTCAATATGTTCAAACACTGCACCTAAAAATAGGTGAGAATGCGCTGCACTTCAGCGCGGGGCCTAAGCTCGCTCTCTGGGGCTTATgggaaaaggctgttttaagtCAACACTTTGGAATGCGAGAGCTCCCCCAGAACTACATCTGTTACCAAGCATAGCGCACTCACGATCAGAGGTGTACAGTAAACTGCTGAAACttcaacactgtgtttaaagacAGTCTTACTTTCAGTGCAGTAGAAAAGAGTGAGTTAGGAGAAGTACAGTGGAGTGgaatagcagaaaaaaaaaaaatttaaacttaTATATGCATACTGCAGCCCTGATCACATTCACCAAATTCAGCAAATTCACCAGTTTTACATGATACATGTTAAAACTCACAGTGGTCAGTGTTAGCTAAAACACTGTTGCCTTCTTAACACTGCCCAGTCTACTATGCATATTGTTATGCATATTGTTTAAGCATTGGTATCGCAAACCGCACATGTGCAgtagtcacatcacaggacaTGCAGTGTATGGCCCCTGTGATTTTTGCAATGAGGAGAACACGTACAGAATCGCCAAAACTGAtccaaagattaaaaaaaaaaacacagcacaatTTGTATGAgagtaaaaaaattcaaaatggattgggggaaaaaaataatcgaaATATCATGccacaccttaaaaaaaaaaatagtaccgtTTTGATTTTATATGACATACAGTCATATTAAATGCAGATAATAGTTGATGTCTAGGCAAATATCTTTTTAttaatatcgtgcagccctaatacgTTCTCATAGTCTCCTCCAAAGACCATTATTACCTATAGATGTATTTTAATACCAGAAAGTGCCTTATTTATAGTTCGTCTTTCTGAATGAGGAAACGAGACCAAAATTATGTTTTGTACACGCTTGAAACTTCAGACGTCACCTGGTTTTAATGTATCACAGCAGTTTTAATAGCTGTGCGATTGACTGAagactgatactgtattttagctattttaggTATTTTAAAGATAAAGGACACCATGTTTTATACCAaagctgtttgttttttcactGCTTAGCATTCAGATACTTTGATTTAACCGTTATCTGAAAGATTCACATGCAGAAAATAGCTTGTATATTTGATCTATTACGTCACTGGCATGGCAGACACAGATTCACGTTTCTCCTCTGAACCTGGCGCAGGTATTTGCACAGGCGTGTAGTTAATCAGAGAGTGGAATACTTGACgttgtgtaaaagtgtaaagtaACTGTGAGTGTTTTTAGCAGTATCACCATTATCACTTATTCTGAATAAACTACTGTCACAGATTGTTGTGTAAATGCAATGAGATGGATGTTTGTTGTGCAAGCTAATGTGCAAGCTGTATATTTAtcttttgattttaaaattaaagttcACAATCGGA

Function

symbol description
itga9 Acts upstream of or within lymphangiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; epidermis; fin bud; pigment cell; and trunk. Human ortholog(s) of this gene implicated in cerebral infarction; hypertension; and pancreatic cancer. Orthologous to human ITGA9 (integrin subunit alpha 9).

NR:

description
integrin alpha-9

GO: NA

KEGG:

id description
K06585 ITGA9; integrin alpha 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237268.3 True 6056 mRNA 0.45 28 32779544 32905463

Neighbor

gene id symbol gene type direction distance location
golga4 NA coding upstream 2773 32722105 ~ 32776771 (+)
ntpcr ntpcr coding upstream 482663 32289852 ~ 32296881 (+)
c1d c1d coding upstream 1254201 31522285 ~ 31525343 (+)
psap psap coding upstream 1323714 31443031 ~ 31455830 (+)
mrps6 mrps6 coding upstream 1343015 31430280 ~ 31436529 (+)
LOC111196032 NA coding downstream 6318 32911781 ~ 32921578 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding downstream 40953 32946416 ~ 32973568 (+)
acoxl acoxl coding downstream 204496 33109959 ~ 33210737 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding downstream 549313 33454776 ~ 33458782 (+)
LOC103021397 NA coding downstream 1888620 34794083 ~ 34829457 (+)
G221036 NA non-coding upstream 58873 32720263 ~ 32720671 (+)
LOC111196029 NA non-coding upstream 67919 32709898 ~ 32711625 (+)
G220940 NA non-coding upstream 93937 32685239 ~ 32685607 (+)
G220926 NA non-coding upstream 193911 32585343 ~ 32585633 (+)
G220924 NA non-coding upstream 284229 32494938 ~ 32495315 (+)
G221090 NA non-coding downstream 2007 32907470 ~ 32960375 (+)
G221101 tmem87b,LOC107754578,LOC107679197,LOC107597636,LOC107688162 non-coding downstream 77978 32983441 ~ 32985180 (+)
G221103 tmem87b,LOC107688162 non-coding downstream 81167 32986630 ~ 32992463 (+)
G221105 NA non-coding downstream 87108 32992571 ~ 32997092 (+)
G221107 mertk non-coding downstream 98078 33003541 ~ 33013829 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 102259 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 200992 32502774 ~ 32578552 (+)
map10 NA other upstream 490694 32284577 ~ 32288850 (+)
G220800 NA other upstream 1041348 31736897 ~ 31738196 (+)
G220610 NA other upstream 1827603 30949012 ~ 30951941 (+)
bcl2l11 bcl2l11 other downstream 308165 33213628 ~ 33232791 (+)
G221292 NA other downstream 538654 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 1257118 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 2081536 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 2112979 35018442 ~ 35025598 (+)

Expression


Co-expression Network