LOC103040609 (LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244)


Basic Information

Item Value
gene id LOC103040609
gene name LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24079867 ~ 24091509 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237747.3
TGGAAGGTTTGCCTCTCCACGCCCTGCCTGTTTCTCCAATCAGCCTGCGCTTCCTCCAGACCGCCTTTCAGCTCAAACGCCTTCACTCTCCGATTAAAACCACAGAAATCCGCGATTCGTGATACTTTCTGGACTAGGGGATTTTCAAGCTAGATAGACTCTACACTCACACTGGGAACACGGTGTTGGGAGGTCGGTCAGTTTCCAGCTGTCCTGGGTGTGTTTACTGGTGTAGACTCTAGTAGATAAAGAAAAGTAGACGAGGATGTCTGGGGATTTGCCACTGAACATCAACATCAAAGAGCCGCGATGGGATCAGAGTACGTTTATGGGCAGAGCCCAGCACTTCTTCACGGTGACTGACCCAAGAAATGTGCTGCTATCAAGTGAGGTTCTGCAGGAATCCAAAGACATTGTGGAGAGTTACAGGCAGGGTGTAGTGAAGCCAGGCCTGACGGAGGATCAATTATGGAGGGCCAAATACATCTACGACTCTGCCTTTCACCCAGACACGGGTGAGAAGATGCTGCTGGTTGGACGCATGTCCGCACAAGTTCCCATGAACATGACCATCACAGGCTGTATGCTTACATTCTATAGGACAACTCCAGCAGTTGTGTTCTGGCAGTGGGTCAACCAGTCTTTCAACGCCATTGTCAACTACACAAACCGCAGTGGAGATGCACCAATTACTGTAAAtCAACTTGGAGCAGCCTATGTCAGTGCCACCACCGGAGCTGTGGTCACTGCTCTTGGACTCAAGTCGCTAACCAAGCGTCTGCCAGCAATTATTAGCCGATTTGTTCCATTCGCTGCAGTGGCAGCAGCTAACTGCATCAACATTCCCTTCATGAGACAAAGAGAACTGAAATATGGTATTCCAGTCACTGATGAGGAGGGAAACCGCCTGGGAGAGTCTGCTAGTGCTGCTCAGCAGGCCATTGCACAGGTGGTGGTGTCTCGAATCGGCATGGCAGTGCCAGCCATGGCTATTCCCCCAGTTATCATGAATTCTTTGGAGAAGAAAGCCTTCATGAAGcgcTTCCCTGTGCTTAATGCACCAGTACAGGTCGGGCTTGTTGGATTATGCCTGGTGTTTGCCACTCCACTGTGCTGTGCACTTTTCCCACAAAAGAGCTCTATGAAAGTGAGCAGCCTGGAGCCTGAGCTGCAGGAGAGTATACGACAGAGCAGCCCTCATACTACAACCGTTTATTTCAACAAGGGCCTGTAGAGCAGTTTTTCTCTCCCTGCCCTGTAATGTTGCACTCTGATATAATGGATTTTAGTGGGCACAATTTGAAGGGTAAatacatatgtatttttttggtttgtctaaaacttacacacacatttatctcattttgctttgctttgtcaCATTTCCCTTTCCTGAAGATAATATGCAATTCAGATTTATTGTATCTGTTCAGTAGATGGAGTGATTTGCCTAGTTTGAAGTGGTACTGTGAGGGTTGTTTGTGGTTTGAAAGGTTGAGGGTATTATGAAGAGCTGTTGTCACATATATAATGGTATTAATAGGTATTCTATTTTGCTAAGTTTTATGCAATGTATCcgcaaaaaatgacctgaattgtatgtatcattatttatttttgcttataGTTAGAACACATGAGCTGTGTATGCTTAAGATAATCTGTATTGTTCTTTAAGACCTCTGCGTTTCTTAGCTAAACATCAGTGTATAGTTCCAGTTAGATCTATACTCTCTGAAAGCTAATGAGCAAATGCAGTTATAGAAATAAGTGTGACTCCTAGGATTATTTGAACCAGCATTAATGGCTTCATATCGTACTCCTGTATGTGCCATTAAAGTGCACTTAACCTGTATCTCCTACATGAATTAAAACACTCCAGGCGACACGCCAGGCCATCATTCTCCGACTACAACTAAAGGCTGTGCTTAGTCAGTGTCTGTATTTCTAAGCTATAAGCCTTATGTATGATCTAACTAATCTGAGTTGACTGGTGCGCACACACACTTTAACTGTTGTATGGTTTGTGTATAAGAATAATCTTGACAGTATCACTGAAAATGGTGGGGGTGTGTTGTGATTACTATGTTGTCTAGTTTCTACCTATAGTATATGCCTTTGTGCCCTAAAACAAATTATAGTTGTGAAAGAATGTGTCTGACAGCTATTGATGGAAACATTAAAAGGTGCAGGTCCTTTATTATGATGATTTTAATTCTGTTACATTATACTGGCAGCATAGATCTTATTGGCTCCTTGTTGGCTGAATTTCTTCAGAAAAGTGCACAGCTGGCCTCTTGGGGGCAATAATTTCAGATTTCATCATAGAGCACTGCCTACTAGCATAATCATTCATTGGTTTTTGTCTTGATTTAGAagttttatgcaaaactgagctTATTGTACCTTTACACAGTGATTGTgtgtgaatataaatatatactatatataaaccCCCATTTAAATGGATAAACTGTTGAAATGTACTTTGGTAGACACTTGGCCTTGATAGTTTTTCCGTGTTCTCATTCATAGTTTGGCTCATCCATGAATGtttgatattatttattttttaaatatttattttttcattggaAGGATATTGTACCAAAAATATGATCATTGGTCAGTGTAATAGCCTGCCCTGTATGTTTATGAAATGCATCACTTTTTGGAGTTTCTGTTATAACTTGAGCAGACATGATCAAATATTTACTGCAGCTGTTTCTGCAGATGAATTTAGCATTTTTGTTTCTACTTCCTTTACCACTTGAAACAAGCTGTAGATTTCTAGTAGGTGaggaaaactatataaaaatatatgttctttttttactaCAGAGAGACAGCAGAAGTTTCTACTACCGCACAGTTACTTTTTAATGCATAGCCGAGTCTTGGGCTGAAACTATGCACatgctgtctttttttttttttttttct

Function

NR:

description
sideroflexin-1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23500 SFXN1_3; sideroflexin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237747.3 True 2943 mRNA 0.41 11 24079867 24091509

Neighbor

gene id symbol gene type direction distance location
LOC103041217 mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529 coding downstream 39499 24030874 ~ 24040368 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 317063 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 337221 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 365509 23709285 ~ 23714358 (-)
washc2c NA coding downstream 371597 23693256 ~ 23708270 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 46313 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 236574 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 314398 24405907 ~ 24428299 (-)
dcaf10 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687 coding upstream 356304 24447813 ~ 24457455 (-)
pomk pomk coding upstream 367822 24459331 ~ 24462707 (-)
G218793 NA non-coding downstream 6733 24070915 ~ 24073134 (-)
LOC111195998 NA non-coding downstream 24745 24054267 ~ 24055122 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding downstream 53978 24022837 ~ 24025889 (-)
G218777 NA non-coding downstream 95351 23981181 ~ 23984516 (-)
G218765 NA non-coding downstream 133321 23946214 ~ 23946546 (-)
G218820 NA non-coding upstream 42676 24134185 ~ 24136995 (-)
G218829 NA non-coding upstream 75886 24167395 ~ 24170774 (-)
G218927 NA non-coding upstream 408164 24499673 ~ 24507296 (-)
G218929 NA non-coding upstream 418136 24509645 ~ 24509912 (-)
G218930 LOC103042321,LOC108441753 non-coding upstream 419865 24511374 ~ 24583080 (-)
G218781 NA other downstream 22990 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 222360 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 230067 23835779 ~ 23849800 (-)
march8 march8 other downstream 422881 23454175 ~ 23656986 (-)
G218545 NA other downstream 1233662 22844833 ~ 22846205 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 591728 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1126640 25218149 ~ 25226250 (-)
G219510 NA other upstream 2381119 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2647295 26738804 ~ 26757592 (-)
G219671 NA other upstream 2735519 26827028 ~ 26827527 (-)

Expression


Co-expression Network