LOC103041217 (mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529)


Basic Information

Item Value
gene id LOC103041217
gene name mat1a,LOC107582520,LOC107678534,LOC107733750,LOC107708460,LOC108263526,LOC105911600,LOC107570529
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24030874 ~ 24040368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237748.3
GTGGTTTGAGAGCTGTTGATAATCAGTGATCTGACTGTaaatctctctgtctgtctgtctctctctctctttctcttttggtctttctctctcagctcTTTTTCCTCCCATATGAAGCTCTGTTGAAGATCAATCTGTTAGGAATATAAAAAACTCTGCATTTGTTGGTCCCAGTTTAGAAGTTCTGTGGAAGATCCTGCTGTTTCTAGTGAAGTTCTGAACACTCAGACGTATCCTGCAGAGATGGAAGGACTGAATGACTTTCATGATGATGGCTCCTTCATGTTCACATCAGAGTCAGTGGGAGAGGGGCATCCGGACAAGATTTGTGACCAGATAAGTGATGCTGTTCTTGATGCACATTTGCGTCAGGACCCTGATGCCAAGGTGGCCTGTGAgactgtgtgtaagactggtatgGTGCTTCTGTGTGGTGAGATCACATCTCGGGCAAACGTGGACTACCAGAAAGTTGTTCGAGACACAATCAAACATATTGGTTATGATAACTCTGATAAAGGTTTTGACTATAAGACCTGCAATGTCTTGGTTGCTCTGGAGCAGCAGTCACCCGATATTGCACAGGGAGTCCACATTGACAGGCACGAGGAGGACATTGGAGCTGGAGACCAGGGTCTGATGTTTGGTTACGCCACTGATGAGACAGAGGAGTGTATGCCTCTAACCATTGTCCTTGCTCACAAACTTAATTCCAAGATGGCTGAACTCCGTCGTGATGGGACCATCCCATGGCTTCGTCCAGACTCAAAAACACAGGTCACTGTACACTACAAGCAAGAGAATGGTGCTGTGATTCCACTGCGTGTGCATACTGTGGTCATCTCAGTCCAGCATGATGATCTCATCTCACTGGAGGAACAACAGAGGATCCTGAAGGAGAAGGTCATCAAGGCTGTGGTGCCAGCCAAGTATCTTGATGACAAGACCGTTTACCACTTGCAGCCTAGTGGTCGCTTTGTCATCGGAGGACCTCAGGGAGATGCTGGAGTAACTGGAAGGAAGATTATTGTGGATACGTATGGTGGATGGGGTGCTCATGGTGGAGGGGCATTCTCTGGAAAGGACTACACTAAGGTGGATCGCTCTGCAGCCTACGCTGCTCGCTGGGTTGCCAAGTCTTTGGTGATGGCCAAGCTGTGCAAGAGAGTGCTGGTGCAGGTATCTTATGCTATTGGAGTGGCCCACCCCCTGTCTATTTCACTCTTCACGTACGGATCTTCTgagaagacagaaaaagaacTACTTCAGATCGTCAACAAGAACTTCGACCTCCGGCCTGGTGTCATTGTTAGGGACCTGAAGCTGAAGAGGCCGATTTACCAGGACACAGCCTGCTACGGCCATTTCGGTCGCTCTGAATTTCCCTGGGAGGTGCCCAAGACCCTGAAGTTTTAAAGCTGTACAAGCCTGTAGAAATACTTCCACGAGAAAACATCATCTCGCCTGCTTCTGTCCTGCTCTTCCTGTTTCTTCATCTGCACATTTGAACGCTATTACATTTGTCTGTAGTAAGGGTGAAACGCATCACTCATAATTGAAGCTCGGTATGTAGGAATCTGTATGTGAATGTGTTAACACGCATTACTATCTAGTTTAGTGAACAGACCTTCAGCCTTTGGGCTTCTTCCTGATGCATCTCAAGATACTGACACTGAGAAAATTGGTCTTAAAGGGAACCCTGGCTGGTATCACTTTGTAAGTATGTAAGTaagcattttttgtttatatatcaCTTTTAGAGCATCccacaaagtgctttacagacagaataaaattaaataaaataaccatCAAGTTTTAGACATGactaaaaacaaaactgagACTGAGAGTCTGATGTCAGTAGGTAGGGAGATCATTCCACAGTTTGGGTCGTAAGCTGCAAAAGCTTTAGTCAGCCTCttactttagtttagtttgtggAACAATCAGTAATCATTGGTTGAAGGACCATAGAGATCTAAGCGGGCGTACATTCATCATCAGGTTGACTCGTCTGTTCTGTGTTGTCTGTGATTTTAGAAATGTACATTTATGACATTTGACTTACAAGATTACTTCTGTTACAGAGGTGGGTTACAGGTGGGTCAAATCATCAAGTATTAGACGTGACTAAAATCAGGAGACTAAAAATTTCTAATGCAACCATTTGATGTTACAACCCAGTGCACACTTTATCAGCAACAGCAACTGCAACCTATGCCTAacagattttatattaaaaaaaaactcaagtcttaaaaataaactaaaacaacttTATACAGATTCAACATTATTTCATCTGTGAAGTGATAGCAGCCGGGGTTCCCATTAAGCATTCTTTGACATTTTTTCACACAGAGCTTATCATGAGATGATTTCTGCTATAAACAGATAACTCTAATTCAGAGTCTGATCAACAATTACCACTAAGTCATACCAATTGTCATAATGAGACAAATTCCAACAAATAACCATGTATCaaacatttttctcttttggttattttatttacttcttttaagttattttattgtaagtgCCTTTATGAATAAAGACATTTACATCTAAATAAAGCATATTTAaggttttttatgtaaaaaagttatttacatGGCATATTTTACTAAAAAGGGAGAAATGTTTGATTAATGGTTTTGTATTGGAAGGGAATATCCTTGgtcttaacacttttttaactcTCGGTGGTGCAGCTAGTTCCTGCGTATGTATTTATGCTGTACCTCACTTTTTTAATTGCTGAAATTTCAGAGATGTTACATATTAGACAAATCACAAAATTGGTGTTTAACCTTCCAGCCAAAGTTTAACACAGTATTTAACACTGTGAcagaattactttatttatcagCAGCACCCAAAAGAACAGCTTTTCCTGGACTTGATACCGTTTGGTTTTGTGCTTGTTTAATAGTCTgacttttcttttaattatttttctctctttttttgtaaattaagtTTGTAATATATGGATCTATGGATTATGAAATACAATGCTGTGAAGAGTGAGTGTGGATTGGTGGACCACTGTAAGCTTTGCATTCGAGAAGCTATTTTTGATGCTAAAACTTTGCAGGAGGCAAACACCATAAGAAACTAAATGTGTGCCTTATTTCTTAAAACGTTACAACGCTTTTTATACCCTCTGTATGACataaatgttatgatggaaATGGTGTAAAGgagatagcgctacactgattGCATGAGTGAATGATGCCTTCCTGTTTACATGTATAGATCCACTGTGGTGTTTTCACCAGAggccagtgtgtgtatgtgtgtgtgtgtgttatcaaCTAAACCCCAGAACCATGCTGTAAGACTGAGGGGTGTTTCAGCCACAGTAGGATTGTTCTTGTTGTCTCCTTTCTGTATGTCTATGCATTCTCTAAAAGGTGCTACTTTAGCAAAAACTGTAGTCATCATTGTTCTCGTCACACATAATAATTAGTGTCTTAAAAATTGTGATGTGATCATGTAAATAATTGTGAATAATTAAACTATTGAACAATTta
>XM_022684895.1
CATGTGTGGTTTGAGAGCTGTTGATAATCAGTGATCTGACTGTaaatctctctgtctgtctgtctctctctctctttctcttttggtctttctctctcagctcTTTTTCCTCCCATATGAAGCTCTGTTGAAGATCAATCTGTTAGGAATATAAAAAACTCTGCATTTGTTGGTCCCAGTTTAGAAGTTCTGTGGAAGATCCTGCTGTTTCTAGTGAAGTTCTGAACACTCAGACGTATCCTGCAGAGATGGAAGGACTGAATGACTTTCATGATGATGGCTCCTTCATGTTCACATCAGAGTCAGTGGGAGAGGGGCATCCGGACAAGATTTGTGACCAGATAAGTGATGCTGTTCTTGATGCACATTTGCGTCAGGACCCTGATGCCAAGGTGGCCTGTGAgactgtgtgtaagactggtatgGTGCTTCTGTGTGGTGAGATCACATCTCGGGCAAACGTGGACTACCAGAAAGTTGTTCGAGACACAATCAAACATATTGGTTATGATAACTCTGATAAAGGTTTTGACTATAAGACCTGCAATGTCTTGGTTGCTCTGGAGCAGCAGTCACCCGATATTGCACAGGGAGTCCACATTGACAGGCACGAGGAGGACATTGGAGCTGGAGACCAGGGTCTGATGTTTGGTTACGCCACTGATGAGACAGAGGAGTGTATGCCTCTAACCATTGTCCTTGCTCACAAACTTAATTCCAAGATGGCTGAACTCCGTCGTGATGGGACCATCCCATGGCTTCGTCCAGACTCAAAAACACAGGTCACTGTACACTACAAGCAAGAGAATGGTGCTGTGATTCCACTGCGTGTGCATACTGTGGTCATCTCAGTCCAGCATGATGATCTCATCTCACTGGAGGAACAACAGAGGATCCTGAAGGAGAAGGTCATCAAGGCTGTGGTGCCAGCCAAGTATCTTGATGACAAGACCGTTTACCACTTGCAGCCTAGTGGTCGCTTTGTCATCGGAGGACCTCAGGGAGATGCTGGAGTAACTGGAAGGAAGATTATTGTGGATACGTATGGTGGATGGGGTGCTCATGGTGGAGGGGCATTCTCTGGAAAGGACTACACTAAGGTGGATCGCTCTGCAGCCTACGCTGCTCGCTGGGTTGCCAAGTCTTTGGTGATGGCCAAGCTGTGCAAGAGAGTGCTGGTGCAGGTATCTTATGCTATTGGAGTGGCCCACCCCCTGTCTATTTCACTCTTCACGTACGGATCTTCTgagaagacagaaaaagaacTACTTCAGATCGTCAACAAGAACTTCGACCTCCGGCCTGGTGTCATTGTTAGGTAA

Function

symbol description
mat1a Predicted to enable methionine adenosyltransferase activity. Predicted to be involved in S-adenosylmethionine biosynthetic process. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in several structures, including anterior neural tube; lens; liver; optic cup; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hypermethioninemia. Orthologous to human MAT1A (methionine adenosyltransferase 1A).

NR:

description
PREDICTED: S-adenosylmethionine synthase-like

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0004478 methionine adenosyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00789 metK; S-adenosylmethionine synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237748.3 True 3545 mRNA 0.40 9 24030874 24040363
XM_022684895.1 False 1322 mRNA 0.48 8 24034487 24040368

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 268070 23750134 ~ 23762804 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding downstream 288228 23723299 ~ 23742646 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding downstream 316516 23709285 ~ 23714358 (-)
washc2c NA coding downstream 322604 23693256 ~ 23708270 (-)
zfand4 zfand4 coding downstream 338979 23662698 ~ 23691895 (-)
LOC103040609 LOC103040609,LOC108441766,LOC108263463,LOC107678536,LOC107708462,LOC107570532,LOC106577244 coding upstream 39499 24079867 ~ 24091509 (-)
lzts2 lzts2,lzts2a,LOC107733684,LOC107582523,LOC107708464,LOC107690159,LOC107570533 coding upstream 97454 24137822 ~ 24255139 (-)
LOC103038918 LOC108441763,LOC108263187 coding upstream 287715 24328083 ~ 24401465 (-)
LOC103039233 NA coding upstream 365539 24405907 ~ 24428299 (-)
dcaf10 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687 coding upstream 407445 24447813 ~ 24457455 (-)
G218779 zgc:154058,LOC103041715,LOC107582519,LOC107570530,LOC107708463,LOC107733751,LOC107678495,LOC108441772 non-coding downstream 4985 24022837 ~ 24025889 (-)
G218777 NA non-coding downstream 46358 23981181 ~ 23984516 (-)
G218765 NA non-coding downstream 84328 23946214 ~ 23946546 (-)
G218731 ccar1,LOC107678563 non-coding downstream 135060 23872841 ~ 23895814 (-)
G218732 NA non-coding downstream 151471 23878257 ~ 23879403 (-)
LOC111195998 NA non-coding upstream 13899 24054267 ~ 24055122 (-)
G218793 NA non-coding upstream 30547 24070915 ~ 24073134 (-)
G218820 NA non-coding upstream 93817 24134185 ~ 24136995 (-)
G218829 NA non-coding upstream 127027 24167395 ~ 24170774 (-)
G218927 NA non-coding upstream 459305 24499673 ~ 24507296 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 173367 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 181074 23835779 ~ 23849800 (-)
march8 march8 other downstream 373888 23454175 ~ 23656986 (-)
G218545 NA other downstream 1184669 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 1974381 22051889 ~ 22056493 (-)
G218781 NA other upstream 15157 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 642869 24683237 ~ 24700649 (-)
LOC103046115 lrit3 other upstream 1177781 25218149 ~ 25226250 (-)
G219510 NA other upstream 2432260 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 2698436 26738804 ~ 26757592 (-)

Expression


Co-expression Network