LOC103041526


Basic Information

Item Value
gene id LOC103041526
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25431246 ~ 25437272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237985.3
ATTTAAATTCTGCGTAATGTTTCGGTGAAAAAGATCACATTCAACTTAACATCGGACTACTCAAGATAAAAAGCGTTCATTGATTAGGTACTGGACGAAAGTGGGACtagcttgtttttttgctgtttgccAATGTGTGAAgattttaaacatgcagaaaaaTGACTAATTTGGCCTGTTTGAATGATTGTTGATGTTCAGTAACGATAGAAAAAAGGTTTAGTTTCTAATGAACTTCACCTCAGACAGAGGACTTGACCGGTCTTGTCCACAGTCTTCGAGTCCACCTCACCCTGAGAAAAAATGTCCGGATTGTTATCAGCACATGTTCAAATAAAAGAAGAGGCGTGTTGTTGTTATGTGCAACCTCAGAGCTGCTTGGGATTGTCACCTAACAGGTATAATGCTTCTGCTGTAATATCTGAACCATCATTTTGCCGCTGCCCTTCAAATCTTCTATCATGTCCTGGAATCAGGAACCAAAAGTTGGGGATCTCATAGAAATCTTTCGTCCTGTGTATCAACACTGGGCCATGTATGTAGGAAATGGCTATGTCATTCACCTTGCACCACGATCTGAGGTGGCGGGTGCTGGCTCCAGCAGTGTGATGTCAGTGATGAATAATTTGGCACTTGTAAAGAAGGAGAGACTCTCAGACGTGGTGGGAAATGATGCTTACAAAGTCAACAACCTCTGGGATTATAAGTATAAACCCAGACATATCAATCTGATTCTCAAAGAAGCTCACAGTCTCGTAGGCCAAACGCTGCCTTACAGCATTGTCAGCAGCAACTGTGAGCACTTTGTCACAGATTTAAGATATGGGAAGCCGACGTCGCGCCAGGTACAACAGGCCATTATTGGAGCAGCTGGAGGTGCAGCTATTGTTGGAGCAGCTGTTCTGGCAGGACTAATTCTCGGATTTGGAAAAGAGAAGGATAATGAACATAAATCCTACCGTCGCTGAAACAaagcaatgtaaaataaaatgattagtCACTGTTTCATACAATTTATTTGGTCTAATTACAGCTGCCAACCCTAGTTATATTtaacacatattttatattaatgcagtttaataataaacaaatgcaCTAAAAACTGTGAGATGAAGAGATCTGAAGTGTCTGCTCACGACTCTTTGCTTTTAAGAGAGTCTGATTATAATGCAACAGTGGGTCTCAAGAAAGTTTGGGCAAAGGATTTGAACATGCTATCAAATTATTAAAACTGTGGCATAGGGTTTTCCAGAATTTAAAACTCTTAGAACTGTTAGAGTAACACAGATTCGCAGAATCTCAGGGAAGTGACATCACTAACACCACAGCAGaagaagaatcaacaacaagtgggactcgtgaagtggaacgaaattgttggatattttaaacaagTGGgacgtgcaatattattcgccCCCCTTGCGTTAATACATTGTTGCGCCACCTTTTGCtgcgattacagctgcaaggcgcttggggtatgtctctatcagttttgcacattctTTCTTGCAACCctttccacagattctcgattgggttcaggtctggactttgacttggccattctaaCAAATCCAACAGTATCTCGGACCTGCCTCgtgtgttccttggtcttcatgatccCCTCTGcgctttaaacagaactctgagactaTCTCAGAGCAGGTGCATTTATATAGGTacttgattacacacaggtggattctatttatcatcatcagtcatttagtTCAAGattggatcattcagagatcctcactaAACTTCTGGAGTGAGcttgctgcactgaaagtaaagagagaga

Function

GO: NA

KEGG:

id description
K23266 RARRES3; retinoic acid receptor responder protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237985.3 True 1813 mRNA 0.41 4 25431246 25437272

Neighbor

gene id symbol gene type direction distance location
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding upstream 687 25417380 ~ 25430559 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding upstream 24383 25340464 ~ 25406863 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding upstream 115639 25310843 ~ 25315607 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding upstream 190245 25226441 ~ 25241001 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 238867 25184634 ~ 25192379 (+)
kiaa1109 kiaa1109 coding downstream 96319 25533591 ~ 25612184 (+)
letm1 letm1,LOC107556916 coding downstream 205281 25642553 ~ 25684011 (+)
LOC103023829 foxi3 coding downstream 577051 26014323 ~ 26018552 (+)
LOC103044529 LOC103044529 coding downstream 643557 26080829 ~ 26086150 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding downstream 652711 26089983 ~ 26125612 (+)
LOC111196009 NA non-coding upstream 34074 25395800 ~ 25397172 (+)
LOC111196010 NA non-coding upstream 41267 25389092 ~ 25389979 (+)
G219173 NA non-coding upstream 162772 25264106 ~ 25268474 (+)
G219167 NA non-coding upstream 178737 25252285 ~ 25252509 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding upstream 185252 25244129 ~ 25245994 (+)
G219271 NA non-coding downstream 7999 25445271 ~ 25445499 (+)
G219282 NA non-coding downstream 195204 25632476 ~ 25692517 (+)
G219286 NA non-coding downstream 309959 25747231 ~ 25807019 (+)
G219367 NA non-coding downstream 463371 25900643 ~ 25900869 (+)
G219374 NA non-coding downstream 509737 25947009 ~ 25947344 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 128659 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 256538 25161727 ~ 25174708 (+)
G219050 NA other upstream 588713 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 964379 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1359620 24064495 ~ 24071626 (+)
LOC103047652 NA other downstream 1447 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1763180 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3053574 28490846 ~ 28551769 (+)
G220074 NA other downstream 3281984 28719256 ~ 28720661 (+)
G220194 NA other downstream 3704095 29141367 ~ 29142018 (+)

Expression


Co-expression Network