LOC103043156 (eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029)


Basic Information

Item Value
gene id LOC103043156
gene name eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25310843 ~ 25315607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237991.3
GAGGATGTTGGCCATACATGTCTTGAGCGGGTCCGGTGAGTCGCTCTGCTCCATATGAGGCCTGTGTGTGAACCAGCAGCATGTAAAATGGCGACTGCGGAGCCGGAAGTCATCTCGAATCTAACTAAGAGTGAAGAGGAGAACTCTGAGGAGACAGGCCAGGAGATTGTCAGCCCTGATTGCTATATCAAACATCCACTACAGAACAGATGGTCTTTATGGTTCTTCAAAAACGACAAGAGCAAAACATGGCAAGCAAACCTGCGGCTGATTTCTAAGTTTGACACAGTAGAGGATTTTTGGGCGCTTTATAATCACATTCAGCTCTCCAGTAATTTGATGTCTGGTTGTGACTACTCACTGTTTAAGGATGGTATTGAGCCAATGTGGGAGGATGAAAGGAATAAGAAAGGAGGCCGCTGGCTAATCACACTCAACAAGCAGCAGAGGAAACTTGACCTGGACCGTTTTTGGCTGGAGACTCTGCTTTGCCTCATAGGAGAGGCCTTCGATGACTACAGCGATGATGTGTGTGGTGCTGTAGTCAATGTCCGAACAAAAGGAGACAAAATTGCTGTCTGGACAACTGACTATGAGAACAGAGATGGTATAACGCACATAGGGAGGGTGTATAAGGAGCGATTAGGCATCCCTATGAAAATGACCATTGGCTATCAGTCTCACGCAGACACAGCCACTAAGAGTGGCTCAACTACCAAGAACAAGTTTGTGGTCTGATATTCTGAACCtgattgctctctctctctctctttctttttctctctcttacacactctccCACTCTCTGATGCTCATTGACTCTGTTCTTGGGTTTGTGTATTAAATCCAACCCTAAACCAAAGCTACACATTAACAGAGTTGATCTAAAATTATAATGAACAACTAAGACTTGTTCAAACCCCAATAGGGAATCCATTCACACCTCAACCCACACAAACCTATAAGGAATTCAGCTCTCATAGGAACCACCAGCATTTAAACACTACACATTCACTCAAGTCCAAGGACAAAGGTTCATAATGATACAGATTCAAAGTGtaacaaaagtttgaacataaTTCCAGTCTTGTGAAAAAGACTGAAACTAGGTCACAACCTATGTTAATTAGGTAATGGAGATTGTAAGATATTTGAtctgttctttttaaaaacaaaaaacaaatctgtGTTGAATAATTTAACCGCTGAGGGAAAAAAACGCCTGTGTGCTCTTATCCAGCAGCCTCGCTGCAGTAGTGCCTAATGAACATAAACCTTTTAATTTATTCAGATTTATCCTAACATTTCATTTAGGTGGTTTAAGACCACTGAATGCATGTAATCAAACAAACCTTCATAAGGCTGccttatttttttcagcattaatgttattaaatttGGGGTTTTGCAATtcaatatgtgttttttatatatattatatatattttttgtgttgtttgatGAAACTGAGGTTTACATTCCGTGTCCGAATGTTAAAATATAGGACTTTAATGATGCTGTAATAGATAACATGTTCTTGTCTGAATGTAATTGGCTTCAATTTGATTCAACTTAGGCACAGTATTATTACTAGGTccttaaataaaacagttttatgagaattgga
>XM_022684920.1
TTACTGCACTGTACAGCAAGGAAGTCATCTCGAATCTAACTAAGAGTGAAGAGGAGAACTCTGAGGAGACAGGCCAGGAGATTGTCAGCCCTGATTGCTATATCAAACATCCACTACAGAACAGATGGTCTTTATGGTTCTTCAAAAACGACAAGAGCAAAACATGGCAAGCAAACCTGCGGCTGATTTCTAAGTTTGACACAGTAGAGGATTTTTGGGCGCTTTATAATCACATTCAGCTCTCCAGTAATTTGATGTCTGGTTGTGACTACTCACTGTTTAAGGATGGTATTGAGCCAATGTGGGAGGATGAAAGGAATAAGAAAGGAGGCCGCTGGCTAATCACACTCAACAAGCAGCAGAGGAAACTTGACCTGGACCGTTTTTGGCTGGAGACTCTGCTTTGCCTCATAGGAGAGGCCTTCGATGACTACAGCGATGATGTGTGTGGTGCTGTAGTCAATGTCCGAACAAAAGGAGACAAAATTGCTGTCTGGACAACTGACTATGAGAACAGAGATGGTATAACGCACATAGGGAGGGTGTATAAGGAGCGATTAGGCATCCCTATGAAAATGACCATTGGCTATCAGTCTCACGCAGACACAGCCACTAAGAGTGGCTCAACTACCAAGAACAAGTTTGTGGTCTGATATTCTGAACCtgattgctctctctctctctctttctttttctctctcttacacactctccCACTCTCTGATGCTCATTGACTCTGTTCTTGGGTTTGTGTATTAAATCCAACCCTAAACCAAAGCTACACATTAACAGAGTTGATCTAAAATTATAATGAACAACTAAGACTTGTTCAAACCCCAATAGGGAATCCATTCACACCTCAACCCACACAAACCTATAAGGAATTCAGCTCTCATAGGAACCACCAGCATTTAAACACTACACATTCACTCAAGTCCAAGGACAAAGGTTCATAATGATACAGATTCAAAGTGtaacaaaagtttgaacataaTTCCAGTCTTGTGAAAAAGACTGAAACTAGGTCACAACCTATGTTAATTAGGTAATGGAGATTGTAAGATATTTGAtctgttctttttaaaaacaaaaaacaaatctgtGTTGAATAATTTAACCGCTGAGGGAAAAAAACGCCTGTGTGCTCTTATCCAGCAGCCTCGCTGCAGTAGTGCCTAATGAACATAAACCTTTTAATTTATTCAGATTTATCCTAACATTTCATTTAGGTGGTTTAAGACCACTGAATGCATGTAATCAAACAAACCTTCATAAGGCTGccttatttttttcagcattaatgttattaaatttGGGGTTTTGCAATtcaatatgtgttttttatatatattatatatattttttgtgttgtttgatGAAACTGAGGTTTACATTCCGTGTCCGAATGTTAAAATATAGGACTTTAATGATGCTGTAATAGATAACATGTTCTTGTCTGAATGTAATTGGCTTCAATTTGATTCAACTTAGGCACAGTATTATTACTAGGTccttaaataaaacagttttatgagaattgga

Function

symbol description
eif4e Enables several functions, including DNA-binding transcription factor binding activity; RNA binding activity; and eukaryotic initiation factor 4G binding activity. Involved in G1/S transition of mitotic cell cycle; positive regulation of mitotic cell cycle; and regulation of translation. Located in cytoplasmic ribonucleoprotein granule; cytosol; and perinuclear region of cytoplasm. Part of RISC complex; eukaryotic translation initiation factor 4F complex; and mRNA cap binding activity complex. Implicated in autistic disorder.

NR:

description
eukaryotic translation initiation factor 4E-1A isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237991.3 True 1627 mRNA 0.40 7 25310843 25315607
XM_022684920.1 False 1542 mRNA 0.38 7 25312333 25315607

Neighbor

gene id symbol gene type direction distance location
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding upstream 69842 25226441 ~ 25241001 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 118464 25184634 ~ 25192379 (+)
ap5s1 ap5s1 coding upstream 512244 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 523503 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 632730 24658431 ~ 24678113 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 24857 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 101773 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 115639 25431246 ~ 25437272 (+)
kiaa1109 kiaa1109 coding downstream 217984 25533591 ~ 25612184 (+)
letm1 letm1,LOC107556916 coding downstream 326946 25642553 ~ 25684011 (+)
G219173 NA non-coding upstream 42369 25264106 ~ 25268474 (+)
G219167 NA non-coding upstream 58334 25252285 ~ 25252509 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding upstream 64849 25244129 ~ 25245994 (+)
G219155 NA non-coding upstream 92826 25217719 ~ 25218017 (+)
G219154 NA non-coding upstream 95035 25209535 ~ 25215808 (+)
LOC111196010 NA non-coding downstream 73485 25389092 ~ 25389979 (+)
LOC111196009 NA non-coding downstream 80193 25395800 ~ 25397172 (+)
G219271 NA non-coding downstream 129664 25445271 ~ 25445499 (+)
G219282 NA non-coding downstream 316869 25632476 ~ 25692517 (+)
G219286 NA non-coding downstream 431624 25747231 ~ 25807019 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 8256 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 136135 25161727 ~ 25174708 (+)
G219050 NA other upstream 468310 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 843976 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1239217 24064495 ~ 24071626 (+)
LOC103047652 NA other downstream 123112 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1884845 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3175239 28490846 ~ 28551769 (+)
G220074 NA other downstream 3403649 28719256 ~ 28720661 (+)
G220194 NA other downstream 3825760 29141367 ~ 29142018 (+)

Expression


Co-expression Network