metap1 (metap1,LOC107733733,LOC107556924,LOC107695030)


Basic Information

Item Value
gene id metap1
gene name metap1,LOC107733733,LOC107556924,LOC107695030
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25226441 ~ 25241001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237999.3
gcagcagcagcagcagtcgtccctccctctctctcagcgTGATCGTCGCTGCCACTGCAGCCCTTTACCGGCCTTCTCCTGCTGAAAGCATGGCGGCGGTGCTCACACGGGAATGTGAGACGGAGGGCTGTAGCAAAGAAGCCAAACTGCAGTGTCCAACCTGTATTAAACTCGGGATACAAGGCTCATATTTCTGCTCTCAGGATTGTTTCAAAGGCAGCTGGAGTACCCACAAACTCCTCCACAAGAAAGcaaAGGAAGACAAAACAAAGGATGAGGGAAAGAACTGTGTGGAGAAGGAAGTCAACACAGACCCATGGCCGGGGTACAGATACTCTGGCAAACTGCGACCTCACTACCCTCTGACACCCATGCGACTTGTTCCTGGAAACATTCAAAGACCAGACTATGCTGACCACCCCCTGGCAGCAGAGGTTGGCTTGTTGGCAGGGATGTCTGAGACGGAGCAGATGCTCAAAGGAACGTCCCAGATTAAGATCCTCAATGCTGAAGAAATCGAGGGCATGAGAGTCGTCTGCAGACTGGCTCGAGAGGTGCTCGACATTGCTGCCATGATGGTGAAACCTGGAGTGACAACAGAGGAGATTGATCATGCTGTACATCTGGCCTGCACTGCACGTAACTGCTATCCATCACCCCTCAACTACTACAACTTTCCCAAGTCCTGCTGTACTTCAGTCAATGAGGTCATCTGCCATGGCATACCAGATCGCCGTGCCCTACAAGAGGGTGACATCCTTAACGTGGACATTACTGTTTACCACAATGGATACCATGGAGATCTGAACGAGACGTTTTTTGTGGGTGAAGTGGACGAGGGCGCCAAGAGGCTGGTGCAGACTACGTATGAATGCTTAATGCAAGCTATTGACGCTGtAAAGCCAGGTGTCCGTTATCGGGAACTGGGGAACATCATCCAGAAACATGCACAGGCTAATGGATTCTCTGTGGTTCGGAGTTACTGTGGCCATGGCATTCATAAACTCTTTCACACCGCACCCAATGTACCGCATTACGCAAagAATAAAGCTGTGGGGGTGATTAAGCCTGGTCATGTCTTCACTATTGAACCCATGATCTGTGAAGGTGGCTGGCAGGACGATACATGGCCGGACGGTTGGACAGCAGTTACTCGAGATGGCAAACGCTCTGCCCAGTTTGAACACACACTCCTGGTGACCGAAACAGGTTGTGACATCCTCACACGTCGCCTTGATGATGATGGCCGCGCTCACTTCCTGACACAGATGTAGAGTGGTGGGGAGAGAACACGGGCCCTTCCCCCAGTGGAGGACACGTCCGCTCCGCCCCTATCACCGATCAGCCAGTTACACTGTGGTTCTCTGTTGGGCAGGAGATGATTGGCCGAGTGGCCGTAGTAATGGAGTGTCTTATTGGGCGAGAAGTGgagatttgtttatttatgaatGTGTCATCTGAACAGTCACATGACTCAGCTTGGATCTGATCAGACTGGTAGACACCGACCTTTGACCTGCTTTGCAGTGCTGCCACTCTTGTTGgtgcacactgtgtgtgtgtgtgtgtgtgtttgcatgtagtattcctgtttggtttgttgtgtgttgtgctggttgaGTGGGGCTTGTGTGTCTTCAGGACAgtgatgtctgtgtgtgtgtgcgtgtctgagaatggatgctgagtgagtgaggATGTCAATCCAGATGAAACCAAACAACTGAAATATTTCCGCAGTTCCTTTTCCTTTACGGTTTATCCTGAGCATAATCGTTGGCCGCAGCCTCCTGTTTACAAAAGAGTGCCTCTAcagattattataatattaagaaaaacaatatattgatGAAATTCTGCCAGCGTGCATCAGACCCTTTCTCTGAAGACTTATTTGTCTATGATCATATGTGAAATATGTGCTGAACTTCTGTGCTGGAGTCTTGTGACTTTGGAATGGTCTGTAGTTTGAGAATGGCTCCTATTGGCTTTGTGCACACCAGTTAACATCTGTTGAAAAGGTTTAATTTGTTTGTGATTGGCCGAGGCATTGCCAGGTACAGAGCTGTTCTGCAGGAATGAACTGGTAGCAGGTTTTTGGTTCTTGGTGCTCTCTGTCTGAAACAGTCAAATCATTTCAGTGGTCTGCATTCAAGCTGAATAAAAGCATATTTTCCTTGTGAA
>XM_007238000.3
gcagcagcagcagcagtcgtccctccctctctctcagcgTGATCGTCGCTGCCACTGCAGCCCTTTACCGGCCTTCTCCTGCTGAAAGCATGGCGGCGGTGCTCACACGGGAATGTGAGACGGAGGGCTGTAGCAAAGAAGCCAAACTGCAGTGTCCAACCTGTATTAAACTCGGGATACAAGGCTCATATTTCTGCTCTCAGGATTGTTTCAAAGGCAGCTGGAGTACCCACAAACTCCTCCACAAGAAAGcaaAGGAAGACAAAACAAAGGATGAGGGAAAGAACTGTGTGGAGAAGGAAGTCAACACAGACCCATGGCCGGGGTACAGATACTCTGGCAAACTGCGACCTCACTACCCTCTGACACCCATGCGACTTGTTCCTGGAAACATTCAAAGACCAGACTATGCTGACCACCCCCTGGGGATGTCTGAGACGGAGCAGATGCTCAAAGGAACGTCCCAGATTAAGATCCTCAATGCTGAAGAAATCGAGGGCATGAGAGTCGTCTGCAGACTGGCTCGAGAGGTGCTCGACATTGCTGCCATGATGGTGAAACCTGGAGTGACAACAGAGGAGATTGATCATGCTGTACATCTGGCCTGCACTGCACGTAACTGCTATCCATCACCCCTCAACTACTACAACTTTCCCAAGTCCTGCTGTACTTCAGTCAATGAGGTCATCTGCCATGGCATACCAGATCGCCGTGCCCTACAAGAGGGTGACATCCTTAACGTGGACATTACTGTTTACCACAATGGATACCATGGAGATCTGAACGAGACGTTTTTTGTGGGTGAAGTGGACGAGGGCGCCAAGAGGCTGGTGCAGACTACGTATGAATGCTTAATGCAAGCTATTGACGCTGtAAAGCCAGGTGTCCGTTATCGGGAACTGGGGAACATCATCCAGAAACATGCACAGGCTAATGGATTCTCTGTGGTTCGGAGTTACTGTGGCCATGGCATTCATAAACTCTTTCACACCGCACCCAATGTACCGCATTACGCAAagAATAAAGCTGTGGGGGTGATTAAGCCTGGTCATGTCTTCACTATTGAACCCATGATCTGTGAAGGTGGCTGGCAGGACGATACATGGCCGGACGGTTGGACAGCAGTTACTCGAGATGGCAAACGCTCTGCCCAGTTTGAACACACACTCCTGGTGACCGAAACAGGTTGTGACATCCTCACACGTCGCCTTGATGATGATGGCCGCGCTCACTTCCTGACACAGATGTAGAGTGGTGGGGAGAGAACACGGGCCCTTCCCCCAGTGGAGGACACGTCCGCTCCGCCCCTATCACCGATCAGCCAGTTACACTGTGGTTCTCTGTTGGGCAGGAGATGATTGGCCGAGTGGCCGTAGTAATGGAGTGTCTTATTGGGCGAGAAGTGgagatttgtttatttatgaatGTGTCATCTGAACAGTCACATGACTCAGCTTGGATCTGATCAGACTGGTAGACACCGACCTTTGACCTGCTTTGCAGTGCTGCCACTCTTGTTGgtgcacactgtgtgtgtgtgtgtgtgtgtttgcatgtagtattcctgtttggtttgttgtgtgttgtgctggttgaGTGGGGCTTGTGTGTCTTCAGGACAgtgatgtctgtgtgtgtgtgcgtgtctgagaatggatgctgagtgagtgaggATGTCAATCCAGATGAAACCAAACAACTGAAATATTTCCGCAGTTCCTTTTCCTTTACGGTTTATCCTGAGCATAATCGTTGGCCGCAGCCTCCTGTTTACAAAAGAGTGCCTCTAcagattattataatattaagaaaaacaatatattgatGAAATTCTGCCAGCGTGCATCAGACCCTTTCTCTGAAGACTTATTTGTCTATGATCATATGTGAAATATGTGCTGAACTTCTGTGCTGGAGTCTTGTGACTTTGGAATGGTCTGTAGTTTGAGAATGGCTCCTATTGGCTTTGTGCACACCAGTTAACATCTGTTGAAAAGGTTTAATTTGTTTGTGATTGGCCGAGGCATTGCCAGGTACAGAGCTGTTCTGCAGGAATGAACTGGTAGCAGGTTTTTGGTTCTTGGTGCTCTCTGTCTGAAACAGTCAAATCATTTCAGTGGTCTGCATTCAAGCTGAATAAAAGCATATTTTCCTTGTGAA

Function

symbol description
metap1 Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm. Is expressed in immature eye; myotome; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human METAP1 (methionyl aminopeptidase 1).

NR:

description
PREDICTED: methionine aminopeptidase 1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01265 map; methionyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237999.3 True 2184 mRNA 0.49 12 25226441 25241001
XM_007238000.3 False 2160 mRNA 0.49 11 25226441 25241001

Neighbor

gene id symbol gene type direction distance location
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 34062 25184634 ~ 25192379 (+)
ap5s1 ap5s1 coding upstream 427842 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 439101 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 548328 24658431 ~ 24678113 (+)
LOC103044475 rab11fip5,LOC108263817 coding upstream 568793 24598605 ~ 24657648 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 69842 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 99463 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 176379 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 190245 25431246 ~ 25437272 (+)
kiaa1109 kiaa1109 coding downstream 292590 25533591 ~ 25612184 (+)
G219155 NA non-coding upstream 8424 25217719 ~ 25218017 (+)
G219154 NA non-coding upstream 10633 25209535 ~ 25215808 (+)
G219153 NA non-coding upstream 18431 25204034 ~ 25208010 (+)
G219151 enpep non-coding upstream 28165 25194787 ~ 25198276 (+)
G219150 NA non-coding upstream 32206 25192908 ~ 25194235 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding downstream 3128 25244129 ~ 25245994 (+)
G219167 NA non-coding downstream 11284 25252285 ~ 25252509 (+)
G219173 NA non-coding downstream 23105 25264106 ~ 25268474 (+)
LOC111196010 NA non-coding downstream 148091 25389092 ~ 25389979 (+)
LOC111196009 NA non-coding downstream 154799 25395800 ~ 25397172 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 51733 25161727 ~ 25174708 (+)
G219050 NA other upstream 383908 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 759574 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1154815 24064495 ~ 24071626 (+)
G218758 NA other upstream 1162653 24059211 ~ 24063788 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 15949 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 197718 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1959451 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3249845 28490846 ~ 28551769 (+)
G220074 NA other downstream 3478255 28719256 ~ 28720661 (+)

Expression


Co-expression Network