eif3l (eif3l,LOC102789421)


Basic Information

Item Value
gene id eif3l
gene name eif3l,LOC102789421
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40198388 ~ 40207129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238500.3
GAAATTTCTCCCGGCTTTCCTTTCCCTCTCCCCGACTCGTGGTTGTTCTGAACGGGGGATAATCGTGTTGATTTTTAACTGGAGAAGCACGCTTTCACCGATTAAACATGTCTTCTTTCCAGAACGAGGAAGAAGAATATGATCCCTACAACTACACCAACGACTATGATCTTCACACTGGTGATCCTAAAGCTGACCTGGCGTTTGAGCGGCAGTACGAGCACCAGCAGACGTACCACGTGATCCCAGAGGTGATTAAGAACTTCCTGCAGTATTTCCATAAGACCATCTCAGACCTGATCGACCAGAAGGTCTATGAGCTGCAGGCCAACCGCGTGTCCAGCGAGAGCATTGAGCAGAAGATCTATGAAATCCAGGACGTCTATGAGAACAGttgGAACAAGTTAACAGATCGTTTCTTTAAGACTTCGCCCTGGCCAGAGGCAGAAGCTATTGCCTCATTGGTAGGAAATGATGCTGTTTTCTTGATTCTCTACAAGGAGCTGTACTATCGGCACATTTATGCTAAAGTCAGCGGAGGACCCACACTGGACCAGAGATTTGAATCCTACTACAACTACTGCAATCTATTCAATTACATTCTCAATGCTGATGGTCCTGCACCATTGGAGCTTCCCAACCAGTGGCTCTGGGACATTATTGATGAGTTCATCTACCAGTTTCAGTCCTTCAGTCAGTACCGCTGTAAAACGGCCAAGAAGTCTGAAGAGGAGATCGAGTTCCTGAGAAACAACCCAAAGATCTGGAACGTGCACAGTGTCCTGAACGTCCTGCATTCACTGGTGGACAAGAGCAACATTAACCGACAGCTCGAGGTTTACACCAgcggagGAGACCCGGAGAGCGTGGCTGGAGAATACGGCCGTCACTCCCTGTATAAGATGCTGGGCTACTTCAGCTTGGTGGGTTTGCTGAGACTGCACTCTCTGCTGGGGGATTATTACCAGGCCATCAAAGTCCTGGAGAACATCGAACTCAACAAGAAGAGCATGTACTCGCGTGTGCCTGAGTGCCAGATCACAACCTATTACTACGTGGGTTTTGCCTACTTAATGATGCGACGCTACCAGGATGCCATTCGTGTTTTTGCCAACATCCTGCTCTACGTTCAGAGGACCAGGAACATGTTCCAGAGATCCACCTACAAATACGAGATGattaacAAGCAGAATGAGCAGATGCATGGGCTGCTGGCCATCGCTCTGACCATGTACCCCATGCGCATCGACGAGagcatccacacacagctcagaGAGAAATACGGAGACAAGATGCTGCGCATGCAGAAAGGAGATCTGCAGGTCTTTGAGGAGCTGTTCAGCTTTGCCTGTCCCAAGTTCCTGTCTCCTGTTGTGCCCAATTATGACAACGTCCATCCCAACTACCATAAAGAACCAttccagcagcagctcaaagtTTTCGCAGAGGAAGTGCAGCAGCAGGCGCAGCTCTCCACCATCCGCAGTTTTCTGAAGCTCTACACCACCATGCCTGTGGCTAAGCTGGCCGGCTTTTTGGACATGACTGAGCAGGAGTTCAGGATCcagttgcttgtttttaaacacaagATGAAGAATCTGGTCTGGACCAGTGGCATCTCTGCTCTGGACGGAGAGTTCCAGTCTGCCTCTGAGGTCGACTTCTACATTGATaagGACATGATCCACATCGCAGACACCAAGGTAGCCCGCCGTTATGGAGACTTCTTCATCCGACAGATCCACAAGTTTGAAGAGCTGAACCGCACCCTGAAGAAGATGAGCGCCTCTGGCTCCTCGACCTCCAGCACCAGCACGGCCCGGGCCACATAAAGCCCGTCACCTCATCAGCAGCTTCTCTGAGGTTCCACCAGCCATCTGGACCCGGTTTACTGAAGCGGCGTAGAGTAGTTCTGATAATCGTTCTGGTGACTGGTGTTGCTTTGAACCCTCGACCACCGAATGATGATCGATACCCTGCGAAGATCCAGtgctccatttctctctctctgactaacTTATCAGGGGCAAACCCTTTTCTCAGATAAAGCAGATGTGGACACTCTGATCCAGTTTGTGTGTGGTTTAATTTTCTATCCATAAACCAACCAGGGCCAATTAAATTCTATTAATCCTGAAGCTTTTTTTGTAGATTAAAAAAGATGAATAAACGTTGATGTGGTGAAGCATT

Function

symbol description
eif3l Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in translational initiation and viral translational termination-reinitiation. Located in membrane. Part of eukaryotic translation initiation factor 3 complex.

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit L

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238500.3 True 2190 mRNA 0.49 15 40198388 40207129

Neighbor

gene id symbol gene type direction distance location
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 87713 40086085 ~ 40110675 (+)
gphb5 NA coding upstream 615170 39577772 ~ 39583218 (+)
LOC111196043 NA coding upstream 821750 39373982 ~ 39376638 (+)
LOC103047800 NA coding upstream 827029 39335281 ~ 39371359 (+)
LOC103040939 LOC108414593 coding upstream 1045958 39052496 ~ 39152430 (+)
LOC103047342 NA coding downstream 1277 40208406 ~ 40217036 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 779045 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 882373 41089502 ~ 41098828 (+)
LOC111195996 NA coding downstream 988856 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 1069856 41276985 ~ 41279078 (+)
G222819 NA non-coding upstream 84725 40050507 ~ 40113663 (+)
G222820 cunh10orf54 non-coding upstream 131396 40062324 ~ 40066992 (+)
G222817 NA non-coding upstream 156662 40040422 ~ 40041726 (+)
G222732 NA non-coding upstream 387562 39808569 ~ 39810826 (+)
G222731 NA non-coding upstream 389961 39805895 ~ 39808427 (+)
G222850 NA non-coding downstream 33629 40240758 ~ 40241004 (+)
G222869 NA non-coding downstream 101819 40308948 ~ 40309775 (+)
G222868 NA non-coding downstream 102751 40309880 ~ 40312837 (+)
G222884 NA non-coding downstream 134425 40341554 ~ 40342874 (+)
G222887 NA non-coding downstream 192648 40399777 ~ 40400065 (+)
G222694 ppp2r5e,LOC102786035 other upstream 484373 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 927250 39197707 ~ 39271138 (+)
oip5 NA other upstream 1299555 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 1454204 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 3179086 37001085 ~ 37019302 (+)
zfyve21 zfyve21 other downstream 123944 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 142678 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 858529 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 977832 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 2036682 42243811 ~ 42371581 (+)

Expression


Co-expression Network