LOC103047342


Basic Information

Item Value
gene id LOC103047342
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40208406 ~ 40217036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238501.3
AGGCTGCTGTGATTCCGGCTGGAGCTCGGAGCGCGCGGAGCTGCGGGAAGAGTCTCGGTGTTTCCGGATGATGTGAAACTTCCACACCGCCGTATTTAAACACAATGCTGAACAGAAAAGTAGCCGGAGCGGAGCTGCTGAGCGCGGCCGCGGGGGTGGACCGAGGCCGGGTGGGGGAGAGGCTGCAGGCGGCGCTGGCCGGGCTGCAGGAGCTTCACCACCTGCGGGAGAAGCAGAGCGACATGGTCCGCTGGGCGCTGCGGCTGGACCGGGAGCAGCCCGCCAGCTCCCCCGCTGTAAACCCCCGAGACTCGGACTCCAGCAGCGAGGAGCAGCGTCTCGAGGCCACGCTTACTGCCCTTAAACAGCAACTGACGCGTCTCCGCAGACAGGATGTTGGACTGAAGACGCACCTGCAGCAGCTGGATCAGCAGATCAGTGAGCTCAAACTGGACGTATGTAAAGCTTCTGCTGAACATCTGGAGAGTGACAGCAGACCCAGCTCAGgaTTCTACGAGCTCAGTGATGGTGGTTTGGGCTCTCTGTCCAACTCCTGCACGTCTCTCTACAGCGAGTGCCTCTCATCCTCATCCCAAGCCAGTTTACTGCCTCTCTCCTCACTTCCCTCTGCACCCCATGCTGTTCTCCTTCCTGCTCAGGCCGAGGTCTCGCGCCGGCGCTCTGCTGACGAGTCCACAGCTCAGCCCGACGCGCCGCGAGGGCCGGGAGTTCGGCTGGGAAGCAGCGGGATCCGGACAACATCAGTCAGCTCAGAACGAGCCAGACAGAGACCTGTCTCAACAGGTGATCTTGATCGAGTCATTAACCCTGGTTTTGGATACTGTAAACCAGTTGACATGAAGACCTCTGCCGTGTGCAGAAACCTCTGCAATCCCACGCTGGACACCAAATTTCAGAGCAACCTCGTGTCCCGCAATGGCATGGAAGTGTACCGCTACCCCAGCCCCCTGCACGCAGTGGCCCTGCAAAGTCCCATCTTCTCTCTTAGTGGAGATCAGGAAACACCGGCGGGCTCTGAGGCCCAAGAGAACCCTGTAGAAGTGGGACTTATGGAGGACACTCTATCCAAGCAGGACTTATCCGCCTCCAGACCTGTAGGTTACATCGTCAAACTGGTCCAGCGCAGCTCCGGTAAGATGAACCTCCAGAGAGAGCTGAGTACAGAAAAGCTCTATACCTCCTGTAGTGACACCCAGGGTCCTGGATTAATTGGTTCCAGAGCTCAAGTTGGGAACTATGGGCCCGTGACTGTAGCTGAAGTGCAGGGTGGCCTACAGCAGAAAACCTTGTACCTGGAGAATCCAGTAGACTCTGGAAAATATTCACCAGCAAGAACTAGTGGACAGGAGCAAATGATCTCCTGTCCTCAAATGATTAGTGATGGGTTTGAAGAATCCAAACCTGTGTGCCAATTTCGATGCCCAACAGGCGCGATGAACCACAGACCTGGTGTTCTGATGGGTCCTACGTTTAAAGTCAGGGAAAAAACTGAGGACCAAAAGCAAAGCACTCTGTTTcaccataataaaaataataaagatgaCTTTAAGGCTACAGCCACAGTCTCCAAGCCTTCAGAGAGCAGACTCAGCCTGATCTCCTCCAGCAACGATGAGAACAGAAGCAGTGACGGAAGTCACCAGAGGACTGGGCAGTCCGAATTCGTCCATGCCCAGTTTGTGCCCGCAGGGTCTCAGAGGGTGAAGGTGCATCAAGACGAGAAGAAAACGAAGGCTGTAAAACTACGGAAGAGAGGAAATGAAAAACCTCCAGGCAAGAAACACCAACAAAGACACTCCTTACGAGAGCTGGAGAAGGACAGAGGATGCCACGTTAAAATACGTGGAGAAACGAGAGACACAAAGCAGATCAGTGGTCGCCTGAGAGAGGCCCGGGTTCGATCTTGCTCAGAGTCTAGTCTTCTTGGACCTGGAAATCCATGTgcttcttcttctactactactaatgctcACCTTCAGTCCAGCCAGCCTCAGCAGAGGTCTAGCAAACCTCGCAAGACCTCCCAAGTACCCGATCTGGGCAACTCTTCTTCTGTTTGTCAGTCGAGAAGGAAACCGAACTCTCGAAAGTGGCCTTCTGCCTCAGAGATCCAGCTGCCCCCCCACCCTTTACAAACCCACCACCAAAGATCCAGAGAGGCACCCACCCACAGACTCGCAGGCCTTTGCCCACAAAAGCCAGGCATGAGACCCCACTCAGGACATTGGGGTGGCGTTCCTCATCCAATCCAACCACCTTTTTCCTCGTCTTCTTCCTCCTACTTCAACAACATGAACCTCAGGTACCCACCAGCACCTGCTTGTACCCGCTACCCCCCGAGGTGCGAGTCCGAGTTCTCCGAGTACTCGGCTGAGTGCGCCTCCCTGTTCCACTCCACCATCGCCGAGAGCAGCGAGGGCGAGCTGAGTGACTTCACCGCTAATCGATTCGGGGACAGCGAATCCAGCCAGGGCTCTCGAACCGCCTCCGACTCGGACAGCAGCCTGTCCCTCGATGAGGAAGACATtttggaggaagaggaggatgaaggagATCTGGTGTGGGCTGAGGCAGCTGTAGGCCCGACAGCAGCTGGGCTTTCCCTGCAGAATCAGCATCCCCCCCGACCTGAGCCGGTGGCGTGCCGAATCAAAGCCTCCAGAGCCCTGAAGAAGAAGATCCGCCGTTTCCAACCAGCTTCACTTAAAGTCATGACTTTAGTGTAGAAATCCTGTCCGGTCTGGATCTTCTGCttgcagtatttttatttgagaCTCTCAGAGGCGTTTCTCAGGCCTGGTCTGGTGCATTCCTGCCATGGTCTTACTTTAGGATCTGCTCTgcactaaaaacacacacatttcaacCCAAGGATTGCttgttaaataaaactggaGCAAAGAAATGTGCCAAAATGTGCACAGTATCACCATTTGGACTGCCACTCCCATGCTGTGCACAAATCTTAAAAATatcttaccttttttttttttttttgtccagtgcaAAACACAATTCTGTTCAAATTTCCGTGATGCACaataattattgtgatattttgcaGCAGATTCTTAAAGAATACCATTCAAAGTAATACAGCTTAACCAAATAGTACATTACATTTTGTAATGGAACTCTTATTAATAGTGAcaatattaagattttaaaatgtgtgtaatgatacAACAAAATATTATCTATCACATTGCCCACCTCTACCCTGCCTTCACTTCATCTGAAGTAATTCCATACTGTATATCGTACTAACCCAAAGACAAAAATCCCGAAAGTGAAGAGATGCGGAACATGTATATGCAGAATGTactctgtaaatatatttttgaatatatcaccaaaaacatttcattttttttgtcaaaattcattcttttgtgtaatattttgttttgcacatTGATTTATAGCTATGCATCTTATTATCTTTGCAAAATAAATGCTATTTAATATTCCAACAA

Function

GO:

id name namespace
GO:0048332 mesoderm morphogenesis biological_process
GO:1900108 negative regulation of nodal signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K22154 DACT; dapper

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238501.3 True 3497 mRNA 0.51 4 40208406 40217036

Neighbor

gene id symbol gene type direction distance location
eif3l eif3l,LOC102789421 coding upstream 1277 40198388 ~ 40207129 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 97731 40086085 ~ 40110675 (+)
gphb5 NA coding upstream 625188 39577772 ~ 39583218 (+)
LOC111196043 NA coding upstream 831768 39373982 ~ 39376638 (+)
LOC103047800 NA coding upstream 837047 39335281 ~ 39371359 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 769138 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 872466 41089502 ~ 41098828 (+)
LOC111195996 NA coding downstream 978949 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 1059949 41276985 ~ 41279078 (+)
LOC103042542 NA coding downstream 1070925 41287961 ~ 41294250 (+)
G222819 NA non-coding upstream 94743 40050507 ~ 40113663 (+)
G222820 cunh10orf54 non-coding upstream 141414 40062324 ~ 40066992 (+)
G222817 NA non-coding upstream 166680 40040422 ~ 40041726 (+)
G222732 NA non-coding upstream 397580 39808569 ~ 39810826 (+)
G222731 NA non-coding upstream 399979 39805895 ~ 39808427 (+)
G222850 NA non-coding downstream 23722 40240758 ~ 40241004 (+)
G222869 NA non-coding downstream 91912 40308948 ~ 40309775 (+)
G222868 NA non-coding downstream 92844 40309880 ~ 40312837 (+)
G222884 NA non-coding downstream 124518 40341554 ~ 40342874 (+)
G222887 NA non-coding downstream 182741 40399777 ~ 40400065 (+)
G222694 ppp2r5e,LOC102786035 other upstream 494391 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 937268 39197707 ~ 39271138 (+)
oip5 NA other upstream 1309573 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 1464222 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 3189104 37001085 ~ 37019302 (+)
zfyve21 zfyve21 other downstream 114037 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 132771 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 848622 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 967925 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 2026775 42243811 ~ 42371581 (+)

Expression


Co-expression Network