LOC103032313 (LOC103032313,LOC108442675,LOC105923605,LOC101067607)


Basic Information

Item Value
gene id LOC103032313
gene name LOC103032313,LOC108442675,LOC105923605,LOC101067607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 45162716 ~ 45166158 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238533.3
GTTCAGTCCAGCTGACTGTCGGGTCACAATAACACCAGTTACACCAGTAGCACCAGTAACACAAACAGCTCCTGCAGTGAGAGTGATAGAGATGGCCAGTAGGATCCTGCTGCGCGCGTGCAGACTGGCCGCGGTCACGAGCCGCCCCGCGCTGCTGAGAGTAGCCCCGCGCGCGCTCGCGAGCGGAGGAGGAATTCCAACAGATGAGGAGCAGGCGGCGGGGCTGGAGAGGCGTATCCTGCAGGCCATGAAAAAGGGCAAAGACCCCTACAGCATATTTAGGCCAAAGGAGTATGCTGGCACCAAGGAAGACCCCCACATCGTACCAGGCATCAGTAACAAGCGTCTGGTCGGCTGCATTTGTGAGGAGGATAACACTGCTATCGTCTGGTTTTGGCTCCATGAGGGAAACTCTCAGCGCTGTCCTTCCTGTGGAGCACACTATAAACTGGTCCATCATGAGCTTCCCCACTGAGTCTCCAGCCAAGACATGAACTTTACCTCACAGGCCCGAAATGTACTTTAATAAACCTTTCCAAACACTCA

Function

NR:

description
cytochrome c oxidase subunit 5B, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238533.3 True 546 mRNA 0.55 4 45162716 45166158

Neighbor

gene id symbol gene type direction distance location
dnajc12 NA coding upstream 724 45159538 ~ 45161992 (+)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 63662 45042650 ~ 45099054 (+)
otor otor coding upstream 146755 45011261 ~ 45015961 (+)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 198611 44951043 ~ 44964105 (+)
myom2 myom2,LOC107660212,LOC107572023 coding upstream 1050866 44060541 ~ 44111850 (+)
gpatch11 NA coding downstream 1188 45167346 ~ 45171173 (+)
lyst lyst coding downstream 19486 45185644 ~ 45245378 (+)
b3galnt2 b3galnt2,LOC107667096 coding downstream 99774 45265932 ~ 45277765 (+)
LOC103029137 tomm20,tomm20a,LOC107690811,LOC107713233 coding downstream 170177 45336335 ~ 45339571 (+)
LOC103028822 NA coding downstream 192551 45358709 ~ 45361946 (+)
G223647 NA non-coding upstream 13206 45149266 ~ 45149510 (+)
G223644 NA non-coding upstream 21032 45141449 ~ 45141684 (+)
G223643 NA non-coding upstream 23515 45138344 ~ 45139201 (+)
G223642 NA non-coding upstream 27668 45134676 ~ 45135048 (+)
G223640 NA non-coding upstream 35269 45127247 ~ 45127447 (+)
G223780 NA non-coding downstream 199132 45365290 ~ 45365938 (+)
G223802 NA non-coding downstream 260022 45426180 ~ 45428067 (+)
G223803 NA non-coding downstream 262331 45428489 ~ 45429041 (+)
G223804 lrrfip2 non-coding downstream 264521 45430679 ~ 45439947 (+)
G223855 NA non-coding downstream 381448 45547606 ~ 45550160 (+)
polh polh other upstream 174706 44980402 ~ 44988010 (+)
tmem14a tmem14a,LOC108425445 other upstream 194619 44965696 ~ 44968097 (+)
mcph1 mcph1 other upstream 215370 44896177 ~ 44947346 (+)
mcu mcu other upstream 1393716 43680151 ~ 43769000 (+)
G223335 micu1 other upstream 1547327 43611623 ~ 43615389 (+)
LOC107197130 NA other downstream 5684 45171842 ~ 45184947 (+)
gng4 gng4 other downstream 81212 45247370 ~ 45258924 (+)
arid4b arid4b other downstream 126844 45293002 ~ 45333281 (+)
G223798 NA other downstream 231538 45397696 ~ 45402815 (+)
G223850 NA other downstream 358240 45524398 ~ 45532148 (+)

Expression


Co-expression Network