znf503 (znf503,LOC103355656)


Basic Information

Item Value
gene id znf503
gene name znf503,LOC103355656
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23292110 ~ 23295682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240294.3
CTCACATCCCTCTATCACTGCATTGGTCTGCTCCTGTCAACGCCTGTCTGATTGGGGGATTCAAACACCATGCGGTTGATCTTCTGTTTGCTGTGGCCGGCTTCTTTCAAAATCCACGGAGCGGTAGGGATGTATTAAAATTCAACAATATAGGGCATATACTGCCTgtataaagtattttatattgaaCACCAACACTATCAGAGCATGTGGAACGCGTCGATGGTTAGCAGTATCAGTCTACCAGTGTTAATATCCTGCTAAGAGTATTTATGATAAATGATGTAGATATTGTAGGTATTTGAATCTAGTAAAAGAGATGACCCGATACAATTTCAGACCTGGCGGGATGGTGGGAGAGATGGGATGTAcagaaatgtgtttatatatgaaGTCTGACCCAGAGTAACTTGGCTAGTGAGAGAAAGGCTGTAAACTGGCTCTAAAAAACGACGGCGTGCGCAAGAAGCAAAGTATTGAACGTGGTCTCCTCCCCCGCGCTggtgggaaaaaaagaaaaagcaaaaacactGAGGCGCTGCTGCGCGAGAGGAGCACGTCACATCCCCTTGACCCTCCAATCACCTCGGGCTCCCATTTGATTGGAAGGCGGCAAAGGCTTTAATCTCGCACTAATTCAGCCGCTTTTGAAGTGAAAATTTCTCCCAGTTCCCGGCTTGGGAGGAGCAGCGCGCGGACGTGCGGCAGAGCAGCGAGAGAGCGCGCGCGACGCGTGTGGTGGGAGAGAGAGACGCAGCAGCTCCGGGATCGGTGGAGAGAGAGCTCGCGCCTTCCCTCTTGCCAGCGGATTAACACCGACTGACgtttgcatttctttttttttttcttcgtttgtttttttgttttttctattttttgagcAGCTGAGAGCGAAGACCGCCGCGTTCATGAGTCCGAGGAGTGAGCGCGCGACTAGCGGGTCATGATCACATCGCCCTCCGCTACTCTTCTCCGATACGGCGACTCGGCACTAGCGTGGGACAGCAGCGGCTCTCGGAATACCAGCAGCAAGCCTTTCTTCCACCCCGTCCCCCCATCGGACCCTTTACGGCAAGCGCAGCGGCTCCCCATCAAAGTGCTAAAAATGCTCACGGCACGCACAGGACACATTTTGCACCCGGAGTACCTGCAGCCTTTACCGTCCACTCCGGTCAGCCCTATCGAGCTAGATGCCAAGAAAAGTCCACTGGCGTTGCTGGCGCAGACATGCTCCCAAATAGGCAAGCCGGACCCCCCGCCCTCCTCCAAGCTCTCCTCGGCATCGTCCGGCAGCTCCGGAGAAAAGGAGGCCAAGTCCGGCCCGCTGAAGCTCAGCGACATTGGAGCGGAGGACAAGTCCAGCTTCAAGCCGTACTCCAAGCCGTCGGACAAGAAGGAGTCGTCTACGGGCGCGACGGGCGCGGACAAGTCCGGTTTCCGCGTGCCGAGCGCCACCTGCCAGCCATTTACGCCTAGGACGGGCAGCCCCACCTCCAGCACGTCGGCCTCACCGATGCCATCGGACGGCAAGGGTGAGCGGGACGAGAAGAAGGAGGGCGAGTGCGCCAAGTCGTGCGCCACGGACAACTCTGGAGCCACGGGCGTCAGCCACAGCCGGATAAGCGTGAGCTGCTCGGGGATTAACGTGGAGGTGAACCAGGAGAGCAAGGCCTCCTCCGCAGCTTCGGCCGCGTCCGAGCCCTCCTCCGTCCCCTCCGCTTCTTCTGCCTCCTCTGTGCTGGGTTCTGGACTCGTGGCACCTGTGTCTCCATACAAACCGGGCCAGGCAGTGTTCCCCTTGCCGCCCGCGGCCATGTCTTACCCAGGCGGACTGGCTGGTGCCTACGGCGGCTACCCGCAGCCTTTCCTGCCGCACGGCGGCAGCCTCGTGAACGCGCAGCTGGCCACGTCGCTGGGCTGCAGCAAGGCCGGCTCGAGTCCGCTGGCCGGCGCCTCGCCACCCTCCATCATGTCGGCGAGCCTGTGCAGAGACCCGTACTGCCTGAGCTACCACTGCGCGAGCCACTTGGCGGGcgcagcggcggcggcgggcGCCTCGTGCGCGCACGACTCCGCCCTCAAGTCCGGATACCCTTTGGTGTACCCCGCGCACCCGCTGCACTCCGTGCACTCCACACCACCGTCCTTCGGCGGCCACGCCGCGCTCTACCCCTACGGCTTCGTGCTGCCCAACGACCCACTACCACACGTGTGCAACTGGGTGTCGGCGAATGGGCCGTGCGATAAGCGCTTCTCATCTTCCGAGGAGCTGCTGAGTCACCTGAGGACCCACACGGCGTTCACCGGGGCCGACAAGCTCATGTCCGGCTACCCGAGCTCGTCGTCACTCGCCAGCGCCGCCGCAGCCGCGGCCATGGCCTGCCACATGCACATGCCAGCCTCAGGGGCTCCGGGCAGTCCCGGGACGCTCGCGCTTAGGAGCCCTCACCATGCGCTGGGACTGAGTAGCCGTTACCACCCGTACTCTAAAAGCCCACTCCCCACAGCCGGAGCCCCCGTGCCCGTGCCGGCCGCCACCGGGCCCTACTACTCCCCCTATGCACTCTACGGGCAGAGACTGACCACAGCATCAGCGCTTGGATATCAGTGAAACGGACTCTTTTTATCCCCACTACACCCTTTCTCCCCTCAAAAAAAtttatagattataaagattgaAATATAAAGACTTTTATAGCAGCGCGCCACTGAAGGACTGGATCCGTGGACTTCTTCCCCTCTCccgtatttatttctgtcagctCAAAGCGGACaataataaagaggaaaaatATCAGAGCAACTCAAAAGTGCATTAAAGTCAGTAGGTGAAAGTGAGAGCCGCGGTAGAGTACTAATAAAACTAGGGGCTCTGCGGTTTTCCACATTGATTTGAAATTGCTATGATTGTATTGTACGTTCTTATTTAATGTCACATTGAAAAGGAAATAATTTACatgcatgtttgttttttttgtttgtttttgttttttaaatcccAAAATTGTCCGCATAATTTTAAATGGCCGTTATTTTTCAGGTGTATACCATGGAGAGAGAattggtatttttttgtatgtattctgggaaaataagaaataattcTGTTGCA

Function

symbol description
znf503 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye morphogenesis and hindbrain development. Located in nucleus. Is expressed in several structures, including external yolk syncytial layer; mesoderm; nervous system; neural tube; and optic cup. Orthologous to human ZNF503 (zinc finger protein 503).

NR:

description
zinc finger protein 503-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240294.3 True 3112 mRNA 0.56 2 23292110 23295682

Neighbor

gene id symbol gene type direction distance location
dlg5 dlg5,LOC107708441 coding upstream 738652 22466478 ~ 22553458 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding upstream 840173 22429642 ~ 22451937 (+)
mocos mocos coding upstream 872768 22405805 ~ 22419342 (+)
fignl1 fignl1 coding upstream 1047662 22240693 ~ 22244448 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding upstream 1087896 22169484 ~ 22204214 (+)
LOC103038538 LOC108444215 coding downstream 113416 23409098 ~ 23414421 (+)
LOC103038211 NA coding downstream 122432 23418114 ~ 23421870 (+)
LOC111195938 NA coding downstream 128927 23424609 ~ 23433147 (+)
tet1 NA coding downstream 488123 23783805 ~ 23834228 (+)
LOC103032634 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC107747456,LOC107708453 coding downstream 540159 23835841 ~ 23841403 (+)
G218561 NA non-coding upstream 33 23291508 ~ 23292077 (+)
G218477 NA non-coding upstream 487644 22803912 ~ 22804466 (+)
G218474 NA non-coding upstream 563610 22727646 ~ 22728500 (+)
G218455 NA non-coding upstream 757689 22533993 ~ 22534421 (+)
G218454 NA non-coding upstream 813124 22478229 ~ 22478986 (+)
G218570 vdac2,vdac3,LOC107747461,LOC107690181,LOC106608573,LOC103386924 non-coding downstream 142552 23438234 ~ 23446098 (+)
G218576 NA non-coding downstream 214203 23509885 ~ 23606964 (+)
G218654 fam21c,LOC107678570,LOC107589565 non-coding downstream 413902 23709584 ~ 23714345 (+)
G218655 NA non-coding downstream 419727 23715409 ~ 23715662 (+)
G218656 NA non-coding downstream 421030 23716712 ~ 23719841 (+)
kcnma1 kcnma1,LOC108263740 other upstream 473996 22563798 ~ 22818114 (+)
G218351 NA other upstream 1073250 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1193851 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 2876467 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 3217767 20020414 ~ 20074343 (+)
G218651 NA other downstream 400895 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 685453 23981135 ~ 24028981 (+)
G218758 NA other downstream 763529 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 768813 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 1147609 24443291 ~ 24466867 (+)

Expression


Co-expression Network