lrmda (cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757)


Basic Information

Item Value
gene id lrmda
gene name cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22846282 ~ 23286449 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240302.3
CTCGCGTGCTTCCTCCTCTGATCAGCTGACTCCAGCATGCGGAAGAGGGCAATTACAATCGTTACTTAGTGAGAAAAGCGAGGTAAAAAGTTGACAACAGTGCAGCAAATACGAGTGAGTGATACCGTTGAGAGGGAAAGTTCCAGACTGTGCTCTTTGCGGCTGTGACAGCGTGTGCGAGGCTCTCTGTGACCTGTCGGCGGTGGGAATGGCGCACAGCGAGGCAGCGGCTGTGGTGAATGGGACTCAGGTGTCCTATATTGGCCATGACTCTGAGGTCATTCCGGATTTTCTCGCAGCTGCTTATGGAAATATTGCAAGGCGACTAGATCTCAGCTTCAACCACCTGAGGTCACTGACAGGCCTGAAAGCATTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCCGGTTGCCCGGGCTACCGCAGCTTCATACCCTAACACTCAATAAGAACCGAATCACCGACATAGAAGACCTCCTCGAGCACTTGCAGGAAGTGACGCCAGCGCTGGAGTACCTGAGCCTGCTGGGAAATGAGGCCTGCCCCAACCAGCTGGTCAGCCTGGATAAAGACGAGGACGACTACCAAAGATACAGGTACTTTGTGCTGCATAAGCTGAAGAATCTGAAGTTTCTGGACAGCAGGAGAGTGACTGCAAGAGAGCAGCTGGAGGCCGAGGCCCGTGGCTCCTTCATGAAGGTGGTCAAACCCAAATTCGAGCAGGATCCCAGTGATGTCAGAGGAGAAGTCACCTCCACGCCCTACACCCCTCTACCCAGAGGCACCAGAGATGCCAAGAATCATAAAGgggTATTTGCCAAGTGCCGCTACGTCTACTACGGCAAACACTCAGAGGGCAATCGCTTCATCCGCAATGACCAgctctgacagacagacagacggacggacggacaggCCGGCAGACAGACGGCGGCTTTATAAAGATATCCTCCTGCGTGtctttataaatatacatatcgCCACATGCATTTTAAGCAGCCAAACACAGCCCTCTAGTGCCTTCTGCTGAGTGTGCCATCGCTGCCACCTCACATCGCTCTCGCGCTGCCTGAGCACTGCCATTCACACTGACATGATTGCCTTTAAGCAGCACTACCCCTCCACGCTGACACAtccgcgcacacacacacacttacatacacttacacacgccccgcacaaacacacacacacacacacacacggaccaCGCCAAGTGCCTGCGCTGACAGCCACTGCTTCATGATGGATTGCCTGCTCCAGCCGCTGCTCTCCGAGGGTCAAGGGTCACAcctgaggctgcagtgggccCACACGGACACCCAGGATGAGCCGCCCTCAAAGTCAAAGCTAaagttaaacacacagagagacactaTTCATTCCGGCTTTTCATGCTCCTCACTTTGTATTCAGAGCACAAGTGGACCAACGGCAGGACATTTCTCACAGCTATATATCTCTACACTGGAGTAACAAAACCTCGTACctccaaaacacaaaacaggaaGTTCACAGGAGAAAGAAGGCGTGTTATTAGCTTTAATGTGTTATATTGAAACAAGAGTTTAGTCCAAGTCAGTTggagatttttatatttaggtCCACTTCTCATGATAGCAGTGTTCTCACAGTGCAAAGGGCAGCTGGTATTTTTTGTAAGTGTAGAAAAAGGAAGTGTTTAAATAactcaaatctttttttatttaatcttcgATTCTAACATTACAGAATGAATTATGCTGAATCCCATAGCTGTACACCACTCACCACAAcgaatttaatatacttttatgTGTTTCCATATATGTTTAATCtgcacatgcatacacacattatatggacaaaagtattggaacaatTCTCATTAGTTATTTCTTCAATActatttgttggagtaactgtttctgcTATCCAGGGAAAAGTGTGTACTACATTTTGGAGAGTATTGTGCATTTTGAGGATTTGACTGCTTCAGAAACAAGAGTCAGGATATTGGATaaacaacatttcagcttttatttccaggtatttatatctggatctgatacacagttcagaagatagcacctcTGTCTGAACCAACCTATTTTTCATGTGAGTATTGGTGTATTGGAACAtgactgtcaggtgtgttttattgcctaggtgtgtcctgatacattaattattcaaacattAAACAGCTCTCGCTTTCAGATTTGGTTCAGATCACAGTTTTAACTAACATGACAAGCAGAAAGCtgtctatgggtgaaaaacaagcaactgtgaagctgagagaagatctATTGCACAAATATCGTCCATAGCCAGAACAACTGTTTGGAAtgccctgaagaagaaagtcgtcactggtgtactaaataacaggtGATGAACAGTGTGTGTCTTTGAAGTTAAAGAAAAACGAAACCAAACTGATTGAAAGATCCTTcatcatgcagcaagataatgatcCAAAACCAGGTGcctgaaaaaaaacatcacactgATGTCAGTGGGTCACAGTCATGATGCAGTTACTGCAAGCAACTAAATATTGagtcttattcactttaatttactttaggATTATATGTTCcaat

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog

GO:

id name namespace
GO:0030318 melanocyte differentiation biological_process

KEGG:

id description
K24399 LRMDA; leucine-rich melanocyte differentiation-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240302.3 True 2610 mRNA 0.46 7 22846282 23286449

Neighbor

gene id symbol gene type direction distance location
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding downstream 451362 22379123 ~ 22394920 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding downstream 486669 22328143 ~ 22359613 (-)
spata48 NA coding downstream 549510 22284552 ~ 22296772 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 571390 22250732 ~ 22274892 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 613050 22222540 ~ 22233232 (-)
LOC103037680 vdac2,LOC108444242,LOC107747461,LOC107582506 coding upstream 152207 23438656 ~ 23446125 (-)
zfand4 zfand4 coding upstream 376249 23662698 ~ 23691895 (-)
washc2c NA coding upstream 406807 23693256 ~ 23708270 (-)
LOC111195939 fam21c,LOC107678570,LOC107589565 coding upstream 422836 23709285 ~ 23714358 (-)
alox5 alox5,alox5a,LOC107747471,LOC107708393,LOC107690200,LOC107582511,LOC107678516 coding upstream 436850 23723299 ~ 23742646 (-)
G218527 NA non-coding downstream 3068 22843001 ~ 22843214 (-)
G218519 kcnma1 non-coding downstream 28178 22809819 ~ 22818104 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding downstream 394346 22441756 ~ 22451936 (-)
G218441 NA non-coding downstream 426909 22416898 ~ 22419373 (-)
G218435 NA non-coding downstream 438533 22405961 ~ 22407749 (-)
G218602 NA non-coding upstream 173043 23459492 ~ 23467044 (-)
G218698 NA non-coding upstream 471982 23758431 ~ 23760825 (-)
G218703 NA non-coding upstream 497369 23783818 ~ 23784105 (-)
G218697 NA non-coding upstream 498918 23785367 ~ 23786980 (-)
G218709 NA non-coding upstream 529422 23815871 ~ 23816669 (-)
G218545 NA other downstream 77 22844833 ~ 22846205 (-)
G218329 eif5,LOC107589547 other downstream 789789 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 801170 22038423 ~ 22045112 (-)
G218240 NA other downstream 991141 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 1088874 21708787 ~ 21757408 (-)
march8 march8 other upstream 167726 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 549330 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 564514 23850963 ~ 23857507 (-)
G218781 NA other upstream 769076 24055525 ~ 24056877 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other upstream 1396788 24683237 ~ 24700649 (-)

Expression


Co-expression Network