vwc2 (vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217)


Basic Information

Item Value
gene id vwc2
gene name vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22328143 ~ 22359613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240306.3
AATTTTTCGTACACAATGTGGCAGCTGAGTTGCAGTTATGTAGTCTCGGTGTTGTTCACTGTGGTACTGCAGCTGTTTTTGGCTGTTGCTCGTTGTCAGGTTTCAGCAGGTTGTTGTTCAGGGGACTCGCTGCAGCTTTAAGAGTCTGGATAAGAGTCTGGGAGCATCGTGGGAACCAAAACAAAACACTCCCAAGTTTCCCTTTAGAAAGTGGTTGAGGTAATGGACTGCGCCCCCTGACGGCGGGTGtagagagtctctctctctctctctctttctctctgttttactgTCTCTTTCCTCCAACTGCCCGCTACGTGACGTCATCGAGCAGGGGTCTTTTTTTTCTGGCACCGAAGCAAAAGTGAGCGCTCGCGGCCGCGCGGCCACTCCTCTCTCAGCTCGGCGGAGCGGCGGGGAGACggtcaggaggaggaggaggaggatatGGAGAGCTTTCACCAACAGCTGATCTCCTGAGTGTCCGTCTGAGCCTCGGCTCgcctcgctctcgctctctctctctgtccgcGTGCAGCTGTGGGTGGTCTTCAGGGAATAAGGAGAAGTTTGAGAGCCcgggagaacacacacacacgcagatgggcCCAGCCTTTGCTTGTCGTTTGACGAGTGTTATGTGAGCCCAGGTGTCGTCCCACCGTGCAGGTGGTGGGAAGGAGAGATGCTGCGCTCCATTGCCATGACAACAGGTCTGGTCTTCATAACTTGGCTCCTGCTGACGAGCGCACGGGGCAGTCCCATCGTGCCGGTGCCCGAGGCTGCGGAGAGGGAGCGTCTGGAGCGGGTGCTGACCCAAGCCAAGGAGGGCATGCCTAACCTGAGTGCCCAGCAGCGCCTCGAGGAGATCAATAACCTGGGACTGGACGGGGTGAGGGGAGGCAACAGGACGAGCGGCAACAAAGCGAGACCCAGCTGGAGCCCCCTGCGGCGAGGAGGAAGCGGCAAACCTCAGGGAAAGACACAGGAGGTCTGGGGCGAGCAGGACTCGATGAAGCAGACTGATGAAGGCCCCACAGGAGAGGCCAATACCTCGCTGGACACCGTTGATGAGTACGCGTACCCTGATTACAGGGGCAAGGGCTGCATGGACGAGACAGGGTTTGTGTTTGCCATCGGGGAGAAGTTCACCCCTGGACCCTCTACATGCCCCTGCCTGTGCACAGACGAGGGGCCGATGTGTGACCAGCCCGACTGTCCGAAAGTCCACCCACGCTGCCTGCGAGTGGATACCAGCCAGTGCTGCCCTCGGTGTAAGGAGAAGAAGAACTACTGTGAATTCCGAGGCAAGACATATGCCTCGCTGGAGGAGTTTAAGGTGTCTCCATGTGAAAAGTGTCGGTGTGAGCCCAGTGGGGAGGTTCTGTGTTCTGTCTCTGCTTGCCCACAGACAGAGTGTGTGGATCCAGAGTATGAACCTGACCAGTGCTGCCCAGTGTGCAAAAGCGGGCCAAACTGTTACGCGGATACTGCGGTGATTCCAGCTGGCCGCGAGGTGAAGATCGACGAGTGCACCATCTGCTACTGCACGTACGAGGAGGGCACCTGGCGCATCGAGCGGCAGGCCACCTGCAGCAGGAACGAGTGTCAGCCCAGCTAGAGCGGCCGGGGCCGTGTCCAGCTCTCACAAATGACCCCCTCCAGCCTTCACCTAGACAGCTTCGTAGCAGCCCGGCGCTGCGGCTCTGAGCTTACACAGGCTGCCAGGACTCCAGCATTATGGGGGGATTACAACCGTCATGACTGTTTGTGACAGCTCATGACTATATGACCTCAGACTGTCAAATAGCATGTAGCACGGGGAGGGGGGTTCGCTAGCCTGGGAGAGACGCCAAGGGCCAGGCCACACAGCGCTACATTCCTCATGCTGTGTGGCACTGCCTCGGAGCTGACATCAAGTGTCACGAAAAGTGCCATGTTTATGATAGTGATACGTACACAGGCCTGAGTTCAAAGGGGCATTGGGATAGAATCAGCTATATTACTACATGAACTTTCTATCGAGATTTATAACCAGTAATAAaggatatttatttatgtatgtattgaTACATTTACGGAGCCAAGGGGACAATGTCTGGTTTACAgttaaaatgctattttttatagTCACTGTATTTTGATATTATGTCATGTACGTTACAGGGACTTAAGTCCGACTCATTAGAATGTATAGAGTGTAAACAGCTGTCACAATGGAtgaaggaataaaaaaataaatgaaaaaacaagttGTGTTAGACATCAGGAAGACAAGCTGTAGTCAGCAATCACTCTCAATGTCAAACACACTTCTCAGTACGTTCCACAGCTCAATGGATGTGTTGAACTGTTTAGGCAAATCAAAGGAGAAAAAATAGCAGCTTGCAGATGTTTGTATATtagttctttttttccttttttttttttttttgtgttccaaACTTAAGTGCATTTTAACAagatgtgtttctgtatttgtgtttacATGTTTCAAATAAATCGAGTTACACTGTGCACTAAAGCGTCCGCCTCAAGACACTGATGTCAGGTTAACCGGGGACACCATCTAAGTCCGTTGGCATTTTTAAAAAGACCGAGACATGCTCAAAATGTCAAGCCGAGAagctgaagaagaaaaaaaaggagggggcaaaaaaaaaaatcctgtaaatTTCATCTGGAGCATCGCTTGTCCGAAGGGCTGAGCGAGACCCAGCTGTTACTTGTGGGATGACACTGCCACCCTGCAAGTCTCTGAAACTCTTTTCAATCAGGCTTCAAATATTGCATCAGATTTTGGATGACGGGGCCCCGCCTGGCTCAAAAGTCAAAGCAACTTGGCTCCTGCACCCTCGTGAGGCCCTGCAAATTAGTCACTGCACCCTGATGGATGAAGACTCTGAGGTTTACTgtcatacactgacatgccatatgtcatgggacaggaactagtttTGTATCTCATGATTTTACCATGTCctgtggaagctaaagaacacgtGGAGTCTCTTGCA
>XM_022684841.1
CTGTGAAACCTaaatgtgctgctgctgctgctgctgctgcgggaAACTGTGTAGCTACTGAGGGAGAATTTCAAcgcgtttctctctctttttttgtaaaaacatgataaagttgaATGTGTCGGCGGGAGCTGCATAACTAACAGAAGCAGGGTCGATTGAGAAACACAGGGGAGTCTGAAAAGCGAAGATTACATCGATTTCCCCGCTTAAACGCTTTAGTTTCGACAAAGTAAGTCATGATATTTCTGCACTCCCCTCCTGACTGACGGGAAACCGAATAaagatgcagctgaaacagagaGCTCGAGCGCCTGCCTGCCTTTTAAAAGCCCTCTCGAGCGAGCCTTTCTTTTCTCGAGCccttttaaaaaacactacaCTGCAGAATTAACAGCAGTATCTGGTGCTGTGATACTCTGTAGATTTAAAGTCTGTTGGCAAGCTTCCCAAAGTATCTTGGCAGGATAACAGGGTGCTGATTTAAAGCCATTTTTCCACACTGCGGTCTCTAGCTAAGTGTGTTACTGGCATGAGCGCTGTCTGATGTTTTATGCAAAAGACGCTGTTTTCTGCTGCTCTGGTGGGCTTTAAGTGCTTGGACAGAGAGAGCTGTGAACTGAAGCCCCTCTGCACCTGTATGTTGCATCAACAGGCTCCATCTACATAAGTGCctccttatttttttcatttttcatttaccTAGAAACTTTCATTAAAGCTCTAAATTTATCATTTGCCattaaagagggagagagaaagagaaagagagagaacgtcTTTTGTTCACACTTCAACAGTTAATGTCTTATCTAATGCACCTGTCAAATACCAcaatttcttcttttcttcgcCTTCTTTCCCCCCTCACCTTTGGCTGAGCTTGATTCAGATCCATTTCTCGATTAACCTCTCTGCTCATCGTTTAACCgattttaatttaatagatTGCCTGTGCATGACTGACCAGGGAAGAGGGGAGATAATTGGTGCGAGGGTTTTTCAGGCTCAGATGATTCGACCCTCAATCCTTGAAGCAATTTACCTTAGTGTCCATCACTGCTGTGTAGAGGTGTGACTGGAAGATTGCTGTCTGTATTGCTTTCCCCATGTGCGAATGCACCCAGTGCAGGGGGgctttcacattttcacatgttTCCAGCTGCTCCCAAGTTTTGTGTGTGCCTACAGCTCAGGAAATGGGCAGAAACAATCTTAGGTTGCGCAAGCACAATCATTCTGAATTGGACAGGAAAATCAATAAAAGGTGTGTTTCTGAATGAGGCCACTGTATTACTTTCGGAGAGGTCCACAAAGTTTGGTAATGCTCCAGTCTTTATgcatttattgtgttattgattTTGGCCAACTGCTTTTGCTAGTCTTGCTGAACTGTGTGTGCTGTGGCAGACCTGTTGGAATTCAATTAGCGTAGGcgctgtccgtggtgctggATCCCTCCATGCCTCATTATGAATGATTGTTTAAAAATGGAGACTAGCTGAAGTCTttatcttgctgcagatgggcCCAGCCTTTGCTTGTCGTTTGACGAGTGTTATGTGAGCCCAGGTGTCGTCCCACCGTGCAGGTGGTGGGAAGGAGAGATGCTGCGCTCCATTGCCATGACAACAGGTCTGGTCTTCATAACTTGGCTCCTGCTGACGAGCGCACGGGGCAGTCCCATCGTGCCGGTGCCCGAGGCTGCGGAGAGGGAGCGTCTGGAGCGGGTGCTGACCCAAGCCAAGGAGGGCATGCCTAACCTGAGTGCCCAGCAGCGCCTCGAGGAGATCAATAACCTGGGACTGGACGGGGTGAGGGGAGGCAACAGGACGAGCGGCAACAAAGCGAGACCCAGCTGGAGCCCCCTGCGGCGAGGAGGAAGCGGCAAACCTCAGGGAAAGACACAGGAGGTCTGGGGCGAGCAGGACTCGATGAAGCAGACTGATGAAGGCCCCACAGGAGAGGCCAATACCTCGCTGGACACCGTTGATGAGTACGCGTACCCTGATTACAGGGGCAAGGGCTGCATGGACGAGACAGGGTTTGTGTTTGCCATCGGGGAGAAGTTCACCCCTGGACCCTCTACATGCCCCTGCCTGTGCACAGACGAGGGGCCGATGTGTGACCAGCCCGACTGTCCGAAAGTCCACCCACGCTGCCTGCGAGTGGATACCAGCCAGTGCTGCCCTCGGTGTAAGGAGAAGAAGAACTACTGTGAATTCCGAGGCAAGACATATGCCTCGCTGGAGGAGTTTAAGGTGTCTCCATGTGAAAAGTGTCGGTGTGAGCCCAGTGGGGAGGTTCTGTGTTCTGTCTCTGCTTGCCCACAGACAGAGTGTGTGGATCCAGAGTATGAACCTGACCAGTGCTGCCCAGTGTGCAAAAGCGGGCCAAACTGTTACGCGGATACTGCGGTGATTCCAGCTGGCCGCGAGGTGAAGATCGACGAGTGCACCATCTGCTACTGCACGTACGAGGAGGGCACCTGGCGCATCGAGCGGCAGGCCACCTGCAGCAGGAACGAGTGTCAGCCCAGCTAGAGCGGCCGGGGCCGTGTCCAGCTCTCACAAATGACCCCCTCCAGCCTTCACCTAGACAGCTTCGTAGCAGCCCGGCGCTGCGGCTCTGAGCTTACACAGGCTGCCAGGACTCCAGCATTATGGGGGGATTACAACCGTCATGACTGTTTGTGACAGCTCATGACTATATGACCTCAGACTGTCAAATAGCATGTAGCACGGGGAGGGGGGTTCGCTAGCCTGGGAGAGACGCCAAGGGCCAGGCCACACAGCGCTACATTCCTCATGCTGTGTGGCACTGCCTCGGAGCTGACATCAAGTGTCACGAAAAGTGCCATGTTTATGATAGTGATACGTACACAGGCCTGAGTTCAAAGGGGCATTGGGATAGAATCAGCTATATTACTACATGAACTTTCTATCGAGATTTATAACCAGTAATAAaggatatttatttatgtatgtattgaTACATTTACGGAGCCAAGGGGACAATGTCTGGTTTACAgttaaaatgctattttttatagTCACTGTATTTTGATATTATGTCATGTACGTTACAGGGACTTAAGTCCGACTCATTAGAATGTATAGAGTGTAAACAGCTGTCACAATGGAtgaaggaataaaaaaataaatgaaaaaacaagttGTGTTAGACATCAGGAAGACAAGCTGTAGTCAGCAATCACTCTCAATGTCAAACACACTTCTCAGTACGTTCCACAGCTCAATGGATGTGTTGAACTGTTTAGGCAAATCAAAGGAGAAAAAATAGCAGCTTGCAGATGTTTGTATATtagttctttttttccttttttttttttttttgtgttccaaACTTAAGTGCATTTTAACAagatgtgtttctgtatttgtgtttacATGTTTCAAATAAATCGAGTTACACTGTGCACTAAAGCGTCCGCCTCAAGACACTGATGTCAGGTTAACCGGGGACACCATCTAAGTCCGTTGGCATTTTTAAAAAGACCGAGACATGCTCAAAATGTCAAGCCGAGAagctgaagaagaaaaaaaaggagggggcaaaaaaaaaaatcctgtaaatTTCATCTGGAGCATCGCTTGTCCGAAGGGCTGAGCGAGACCCAGCTGTTACTTGTGGGATGACACTGCCACCCTGCAAGTCTCTGAAACTCTTTTCAATCAGGCTTCAAATATTGCATCAGATTTTGGATGACGGGGCCCCGCCTGGCTCAAAAGTCAAAGCAACTTGGCTCCTGCACCCTCGTGAGGCCCTGCAAATTAGTCACTGCACCCTGATGGATGAAGACTCTGAGGTTTACTgtcatacactgacatgccatatgtcatgggacaggaactagtttTGTATCTCATGATTTTACCATGTCctgtggaagctaaagaacacgtGGAGTCTCTTGCA

Function

symbol description
vwc2 Acts upstream of or within forebrain development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in brain; olfactory system; and spinal cord. Orthologous to human VWC2 (von Willebrand factor C domain containing 2).

NR:

description
PREDICTED: brorin

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
K24521 VWC2; brorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240306.3 False 3017 mRNA 0.51 4 22328143 22359613
XM_022684841.1 True 3939 mRNA 0.48 3 22328143 22359005

Neighbor

gene id symbol gene type direction distance location
spata48 NA coding downstream 31371 22284552 ~ 22296772 (-)
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 53251 22250732 ~ 22274892 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 94911 22222540 ~ 22233232 (-)
bag5 bag5,LOC107698150,LOC107708429 coding downstream 166555 22143477 ~ 22161588 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding downstream 221661 22099581 ~ 22106482 (-)
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding upstream 19510 22379123 ~ 22394920 (-)
lrmda cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757 coding upstream 486669 22846282 ~ 23286449 (-)
LOC103037680 vdac2,LOC108444242,LOC107747461,LOC107582506 coding upstream 1079043 23438656 ~ 23446125 (-)
zfand4 zfand4 coding upstream 1303085 23662698 ~ 23691895 (-)
washc2c NA coding upstream 1333643 23693256 ~ 23708270 (-)
G218388 NA non-coding downstream 123680 22202153 ~ 22204463 (-)
G218387 klc1 non-coding downstream 138552 22179388 ~ 22189591 (-)
G218386 apopt1,LOC107582494,LOC107698146,LOC107721215 non-coding downstream 161750 22164760 ~ 22166393 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding downstream 208080 22109175 ~ 22120063 (-)
G218374 NA non-coding downstream 228748 22099142 ~ 22099395 (-)
G218423 NA non-coding upstream 36479 22396092 ~ 22399546 (-)
G218435 NA non-coding upstream 46348 22405961 ~ 22407749 (-)
G218441 NA non-coding upstream 57285 22416898 ~ 22419373 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding upstream 82143 22441756 ~ 22451936 (-)
G218519 kcnma1 non-coding upstream 450206 22809819 ~ 22818104 (-)
G218329 eif5,LOC107589547 other downstream 271650 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 283031 22038423 ~ 22045112 (-)
G218240 NA other downstream 473002 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 570735 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 1121317 21160374 ~ 21206826 (-)
G218545 NA other upstream 485220 22844833 ~ 22846205 (-)
march8 march8 other upstream 1094562 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1476166 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1491350 23850963 ~ 23857507 (-)
G218781 NA other upstream 1695912 24055525 ~ 24056877 (-)

Expression


Co-expression Network