spata48


Basic Information

Item Value
gene id spata48
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22284552 ~ 22296772 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240314.3
taaactggGTCATTTTACTCCTGTTGGGTCTCTGAAGTTATTGGAGTGTGTCGGTTAGTGGTCGCTAGGCAACAGCGGACGCTGAGCACAGGTTAGGACGCGGCTGAAGCGCAGAGGCAGGAGCTGAACAGTCTGAAGATCGCCTGAGGAAAACTAGCTACCTGTGAGTCTACCTGTGGTTTATTTCAAACCTGTTCTGATGAAGCAGGTACCCAGCAGACCCCCCAGCGTGAGGCTTCTCACGCGGCCCTGTGAGACCAGAGCGGAAACGAGCAGATGGCTGTGCAGAAACCTGAACCTGCCCTATGAACGGGGTCCATCTGAGGTTAAGAGTCTGACTGAGACAAACGAGCCTGGCTTCCTCAAGTTCAACCCTCAGGCCCACCCTCCCGCTCACAGTGCCCCCCTGGCTCCTCTCAGAGACCTCGTTCCGCTGACAGAGCCCGGCTCCGGCCTGCTGAGCGCAGGAGCCCGGGCTGATCTCAGACTCCCGGGAAAGACCAGGTTTATAGATCGAGTTTATACCCCGTCTGACCTGAGGACCCCCTCTGGAGCTAGAGACAGACCCCAGACTCCAACAGGAAGACCCTCAGCTGTTACAGAAGATCTGTCCGAGGACAAGCGCTGGAACTCAAGAACTAGATCAGAGCTAGCAAAGCTTCAAGACCAGGCAGCCAATGAGGAAACTGAGCCAGATTTCCCCAAAACTCCCTGGTCTGCCAAACCTCCTGAGAAGGATGTACGCTCCTCTGTCCTTTCTGACTTTGTGGACACGGCAGCTCGGCGGTACAGCTACACATCAGCGGCTCAAAGAGGTTATGAGGATGTAGACTGGGACTCTAAGTTGCCTCCTCGTTTCAAAGCACCCTTAAGCACTCTGGAGAAAATGGCTGACCCTGTTAATCAGCACTTCACTCTGAAGAGATATAACAGCCGGCCTGAGCTATGGCAGGCCATTGGAACTTATTGGAATAAGCATCAACTTCGTGCCACATATAATGCGAAGAAACCTGTTAGtttTACCAGCCCACATCCAAAATCAGGCCAAATTCCTTTATACTGTGGTGTGGTGGGCTCTGAGAATATGGACAACGTAGATGACCCAGATAAGGATTTTAAACCTCTAACCGTGCTGCGCACCATCTTGCCCCCTTACACTCCAACAGCCCAtcgtCCCACTATACCTGGTTACACTGGTAAAGCTCTGCATGCCAGGCCACACACCTCAGACATCACACTGCCCTCTCGTCCAATTCCAGGGAGCAGTTTGCCCCCCTCAGTGTACGGTCGCAAAGCCCCTTTGTCCAGAATGGTCACCACCGTCTCCCCATGCAATCCTTTTCTCCTCCCGAAAACTCCTGCACTTCCCTCCTAACATCTCTCAAGGCtgctgaacagaaaaaaagaagaaaagaactcTAAATGTAAAACAGAGGAATAAAGTGGTGAAAACCTGTGGAAAAAGATCATGCCTTTTGAAGAAATCCAATCTGTATTTGTGAATAGATCTATAATGATGTGATGTCAATGACTGATTCTCTGCGAGTTCGGGATAATGAGATGCTTCATTTGCATAATTTCCCTTGATTCAGATGAGACGTTTGGTGAATGTGGAAGATATGTCATTGTATTACACtttgcatatactgtatgtgtgtggtaagtgtgtgcgtgtgtgcattAAAGTGCATCAAAAATGTCTGCA
>XM_022684936.1
TACTTTAATACCGGTTTTATACTCATTAAAATGAACAGGAAATTGGTTAATTCAATAACTGTTTGATAAGAGAGAAAAACGGCTGGTGTAAAcaaggctaagctaagctaagctaaactggGTCATTTTACTCCTGTTGGGTCTCTGAAGTTATTGGAGTGTGTCGGTTAGTGGTCGCTAGGCAACAGCGGACGCTGAGCACAGGTTAGGACGCGGCTGAAGCGCAGAGGCAGGAGCTGAACAGTCTGAAGATCGCCTGAGGAAAACTAGCTACCTGTGAGTCTACCTGTGGTTTATTTCAAACCTGTTCTGATGAAGCAGGTACCCAGCAGACCCCCCAGCGTGAGGCTTCTCACGCGGCCCTGTGAGACCAGAGCGGAAACGAGCAGATGGCTGTGCAGAAACCTGAACCTGCCCTATGAACGGGGTCCATCTGAGGTTAAGAGTCTGACTGAGACAAACGAGCCTGGCTTCCTCAAGTTCAACCCTCAGGCCCACCCTCCCGCTCACAGTGCCCCCCTGGCTCCTCTCAGAGACCTCGTTCCGCTGACAGAGCCCGGCTCCGGCCTGCTGAGCGCAGGAGCCCGGGCTGATCTCAGACTCCCGGGAAAGACCAGGTTTATAGATCGAGTTTATACCCCGTCTGACCTGAGGACCCCCTCTGGAGCTAGAGACAGACCCCAGACTCCAACAGGAAGACCCTCAGCTGTTACAGAAGATCTGTCCGAGGACAAGCGCTGGAACTCAAGAACTAGATCAGAGCTAGCAAAGCTTCAAGACCAGGCAGCCAATGAGGAAACTGAGCCAGATTTCCCCAAAACTCCCTGGTCTGCCAAACCTCCTGAGAAGGATGTACGCTCCTCTGTCCTTTCTGACTTTGTGGACACGGCAGCTCGGCGGTACAGCTACACATCAGCGGCTCAAAGAGGTTATGAGGATGTAGACTGGGACTCTAAGTTGCCTCCTCGTTTCAAAGCACCCTTAAGCACTCTGGAGAAAATGGCTGACCCTGTTAATCAGCACTTCACTCTGAAGAGATATAACAGCCGGCCTGAGCTATGGCAGGCCATTGGAACTTATTGGAATAAGCATCAACTTCGTGCCACATATAATGCGAAGAAACCTGTTAGtttTACCAGCCCACATCCAAAATCAGGCCAAATTCCTTTATACTGTGGTGTGGTGGGCTCTGAGAATATGGACAACGTAGATGACCCAGATAAGGATTTTAAACCTCTAACCGTGCTGCGCACCATCTTGCCCCCTTACACTCCAACAGCCCAtcgtCCCACTATACCTGGTTACACTGGTAAAGCTCTGCATGCCAGGCCACACACCTCAGACATCACACTGCCCTCTCGTCCAATTCCAGGTTTATGCAACAAGATCCTCCAACGTGATGCAGATGAGCTTAGAAACAGCCTACCACCCTCTCACTCTCGCAGGCAACGGTAAAACGTCCTCAGCTTTCAGAATGAGTAGGAATGGGGCATCTGCAGCACAAGCAGAGAGGaagggggaggaggaggtgtCTGAGAGAGGCACTGGAGGAAAACCAAACTCCTCACCCAGGGACTGGGTGGGTTTTTTTTGAAAACGTGTTTCCTAGCCGGGTCTCAGAAGAGCTGGTTTACCGGCTTTTGGAGCAGCCTTCTCCAGATGGTCCTATCCAGAGCTGAACTGTATGAGTTGCTGGTGGTAATCGTGGTTTTTCGCTCGACCCAGATCCATTTTCCTGGAGCCACTGGCCCTCTGAAATCTGTTTCCTCTGCTGATAAAGCAGGCCTCCCATCTTTTCCTTATAGCAGAGAGGAGGACCAGCTAGTACCTTAAGAACTTCCTCTAACTTTCATCACCCTCTGAGTTTACACCAagaattactgttattttttcagCAGCcggtagaaataaaaaagaataaaaaaaagatacaaactgatattttttttactctaaatacagtctaaataattataaaacatagACTGGTCTCATTCTATTGGTTGTCTGGTTATTTGATGAGTTGATGAGCCTTAGACACAATCCTGTTTCACCCCTTTCAACTACCACTTAGCCCTTCCCCTTTGTTTTGTGTATTCACAACTAGAGGAAGGGTGTGCTGATTCCTATTGGAATAAAGGGGTAGGTTGATGTATAAAGGGATTGGTTGATGtgttgggtttactttgtcccacaaaagtacacaatatatgaagaaatcagacttcattagcagaaaaacagcggaaaaatgtaaaaatagaccttaaaaagagatatgcCAGCAACATTAACATGGCTTTCTTTTCAAAActagctaaatatttaatttccataaacactataaatggacctaaaatactgtttattcaAAAGTTCTATTTCACAAGTTTATCACAATTCCCATGGTTCTCCAGTgaacaaataaattcagttcaaTGTGCATTACTATTATCCTTCAAGcaacaatattaataaatttaaaCACAACTATAGTTACTGATATTGTAAATTGTCATTCTGCCCATCCCCTTTTTAAAGACGccctaaactaaaataaattccaGCCGCGAGGTTGCATAACTTTAGCACTCCTCTGCTATCACAATAGAATTGCATTGTCGCCTACAGAGCATGATTGCAGCCTGGTACTGATGCAGTGttcttatttaattaatttatttctttttcaacATATCAGGTTCTTAGGTATAGGATTTTAACCACTTCCAAAGGAAAAAGtgacacttaaaaataagggtgacacttaaaaataagggttaTGGGTACAAATGACAAATGGCATTGGGTCCTAGAAGTTCAGTTCCAGTATTTCAATGTCTAATTAAAgctaatgtatgtt

Function

NR:

description
uncharacterized protein C7orf72 homolog

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240314.3 False 1705 mRNA 0.50 9 22284552 22296659
XM_022684936.1 True 2863 mRNA 0.45 9 22285006 22296772

Neighbor

gene id symbol gene type direction distance location
ikzf1 ikzf1,LOC107698154,LOC107721232,LOC107708437,LOC107589539 coding downstream 9660 22250732 ~ 22274892 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 51320 22222540 ~ 22233232 (-)
bag5 bag5,LOC107698150,LOC107708429 coding downstream 122964 22143477 ~ 22161588 (-)
LOC103021922 ckb,kcrb,LOC108444021,LOC107698148,LOC108263462 coding downstream 178070 22099581 ~ 22106482 (-)
LOC103023885 NA coding downstream 294523 21968779 ~ 21990029 (-)
vwc2 vwc2,LOC107589538,LOC107678488,LOC107698155,LOC107721217 coding upstream 31371 22328143 ~ 22359613 (-)
LOC103042035 zgc:110045,LOC108444131,LOC107582498,LOC107721227,LOC107678543,LOC107708438,LOC108262845,LOC107698144 coding upstream 82351 22379123 ~ 22394920 (-)
lrmda cunh10orf11,c3h10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444,LOC105909757 coding upstream 549510 22846282 ~ 23286449 (-)
LOC103037680 vdac2,LOC108444242,LOC107747461,LOC107582506 coding upstream 1141884 23438656 ~ 23446125 (-)
zfand4 zfand4 coding upstream 1365926 23662698 ~ 23691895 (-)
G218388 NA non-coding downstream 80089 22202153 ~ 22204463 (-)
G218387 klc1 non-coding downstream 94961 22179388 ~ 22189591 (-)
G218386 apopt1,LOC107582494,LOC107698146,LOC107721215 non-coding downstream 118159 22164760 ~ 22166393 (-)
G218376 trmt61a,LOC107582491,LOC107698149,LOC107678528,LOC107589545 non-coding downstream 164489 22109175 ~ 22120063 (-)
G218374 NA non-coding downstream 185157 22099142 ~ 22099395 (-)
G218423 NA non-coding upstream 99320 22396092 ~ 22399546 (-)
G218435 NA non-coding upstream 109189 22405961 ~ 22407749 (-)
G218441 NA non-coding upstream 120126 22416898 ~ 22419373 (-)
G218448 anxa11,anxa11a,LOC108263209 non-coding upstream 144984 22441756 ~ 22451936 (-)
G218519 kcnma1 non-coding upstream 513047 22809819 ~ 22818104 (-)
G218329 eif5,LOC107589547 other downstream 228059 22051889 ~ 22056493 (-)
LOC103022835 NA other downstream 239440 22038423 ~ 22045112 (-)
G218240 NA other downstream 429411 21851372 ~ 21855141 (-)
LOC111195999 NA other downstream 527144 21708787 ~ 21757408 (-)
LOC103031576 cisd1,LOC105902329,LOC108443718,LOC107549159,LOC107747252,LOC107665600 other downstream 1077726 21160374 ~ 21206826 (-)
G218545 NA other upstream 548061 22844833 ~ 22846205 (-)
march8 march8 other upstream 1157403 23454175 ~ 23656986 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other upstream 1539007 23835779 ~ 23849800 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other upstream 1554191 23850963 ~ 23857507 (-)
G218781 NA other upstream 1758753 24055525 ~ 24056877 (-)

Expression


Co-expression Network