fignl1 (fignl1)


Basic Information

Item Value
gene id fignl1
gene name fignl1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22240693 ~ 22244448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240315.3
GCACTGGTGGTAAGAAGCGCGTATGAActggtagcacaactcgacagaacaccggctctGCCTCTGGTACATCCGGGACACCACCACACGGTGGCAGCAGCACTCCTCCCAGCGCGGAGAGAGAGCAGCCGGAAGAGGCGGGAGCTGAGGCCGCGGGAAGTTCGGCGAAacttgtgtttatgtgtgaagcCGGGAACCGATATATTACtaaattaataacttaaaacgtACACAGGTTACATTTGAGAGGCTGGAGCAGGCCAGGCATGAGCAGCGCACACCTGGACGAGTGGCAGAGGAGGTCCTTTGACATTTCATCTGGCACATACACACCTGAACAGACGGCCGATGCTTATCGGGCACATATCCTGTCCATTCAGTATGCATGGGCGAGTGCCGAGCTCTCTCCGGCCGGAGCTGCCAGCCTGCTCAGGACCTACTCCGAGCGCTACGCTTCGGTCCTGGACTCAGACGACCAACGCACAGGGCTCAACAACTACGCTGACAGTGCCCTGCACCTGGCCCGCAATCAGAAAAACCACAGTGACAAATGGGAGTCGTCCCTAACGACAGAGAATGTGTTCAGCCTGCCGTGTGTGCAGAGGATGATGCGGGCCGGAGCAGAAGATGCTAAGCTCTCTGTGGATTCAGACGATGCTGACATTGTGGTTGGTGTAGAGGTGAACAAGAATGAGGGCAAAAGTAACATGGAGTTTGTTTCTGCCGGGGGACTGAAAACAGATCATCACGTTTCCATGTCTGCGTATCTTCCCAATGCAGAATCGGTAAGCACAGCATGTACCTCTTCAAGTGTTGCAGCAGAGAGGGCCAGAGACAAGGATAGAGCACCAGCTGTCGTTCCTTCAGCCCATAACACTGCAAGAGCTCATTTAGAGGTGGGACCACTTTTTGGTCATACTGCCCATAACTTTCCAGTCAACTCTGGGTCTTTTCCACAGTCCAGTGTGGGTCACGCTAGTACGTCCAGTGCAAACAATCAAACGCCTGGGTTCTTCTCCTCTACAAATCCAGCCAAGAGGAAGAACTTCTACAGTTCAGGAACTGAAAGCAACAGAGGCCCCTTTCCACACCAAGGAGGGCAAGAACTTGGAGGAGGTGGACGGAGAAGGGAGGAGGCTCCAGGCACTAATTTCAAAACCGCCCGAGAGCAGCTTATTGTAGACCAGCAGAAAAAGCATTCATATCAGGGCCAACGTGGCTCATCAGCTAACGTTGCCACCATAACCAAAAAGTGCCTGGGAGCAAACCGGTCCCGAGGAACCCACTCCAAATTTGTCTCACCAATGCCAAGACAGGAGGATGAAGGCAGGGATGACCCAGCACAGGACACTCCACCCATTGATGAACGACTAAAGAATTTCGAGCCCAAAATAATTGAACTGATCATGAGTGAAATTATGGATCATGGTCCACCTGTGGCTTGGGATGATATTGCAGGCCTTGAGTTTGCCAAAACCACTATAAAAGAGATTGTAGTGTGGCCCATGCTAAGGCCAGATATTTTCACTGGCCTCCGAGGTCCACCTAAGGGGATCCTCCTGTTTGGCCCTCCAGGCACAGGGAAAACACTCATAGGCAAGTGCATAGCCTGCCAGTCTGGAGCAACGTTTTTCAGCATCAGTGCTTCCTCACTCACATCTAAGTGGGTgggagagggggagaaaatGGTGAGGGCACTGTTTGCAATTGCCAGATGCCATCAACCAGCAGTCATTTTCATTGATGAGATTGACTCTCTCCTTTCTCAGCGCACGGATGGAGAACACGACTCCTCTCGCCGGATTAAGACTGAGTTCCTTGTCCAGCTCGATGGAGCTGCCACCTCCTCTGAGGATCGTATCTTGGTGGTGGGAGCCACCAACCGGCCGCACGAGATTGATGAAGCTGCTCGCCGCCGCCTTGCCAAACGACTCTACATTCCACTTCCGGAGGCCGCTGCTCGTCGGCAGATAGTGATCAACCTGATGACACGAGAGAAGAGCCAATTAGGACCTGAGGAGCTTGAGAAAGTGGTGTCCGGCACAGAGGGTTTCTCAGGGGCTGATATGACGCAATTGTGCCGTGAGGCAGCCCTCGGCCCAATTCGCAGCATCCAGCTCAGTGACATCGCCACCATTACACCTGAGCAGGTGCGTCCTATACTCTACTGTGATTTCCAGGAGGCTCTTAAGACTGTTCGTCCCAGTGTGTCTAAAAAAGACCTTGAGCTCTATGAGGAGTGGAACAAGACTTTTGGTTGTGGTCGATAATCACCAAACCACTTGGCCTTAAActgtaatgttctttttttgtgagtTTAATGTAGTTGAAAGTAATTTGGATCGATTGCTGCAGTTTGTGTATGCTCCACAGTTGAAAAGTTAACAACTGctctgtttaaaaatgtgtgtaacaGTTTTAGGTTCTTTGTGATTTAGGAGGAGCCATTATTTtgtgttataaaaataaataaatgtttttctaaaatatgactttgttttaaatgtttacaatGTTACAGCACACATTGacaattttattcttaatttaaattgTGAGACATCAGAGAATCCTTAATTTACCTCTAGGAGacagttttccagacagggacTAAGTCTCGTCTGTGGCTGCAAAAAGCATTGGAGATTTTctatttgaaagaaaaaaaaaatcccaggcTGGGAAACTTACCCGAAATTGTTTCCTCAGTTGGTCTCTAAAAAGGAGCAAAGAGGACAAAGCTAAATTTGCACAAATTTCCAGTAAAATTAAACAGTGGTGCAGCTTTTTCCCAGAAATTTAGAGGAAATGTGCTAACTTCATGCTAAAAGGGAACAAGATgctctgtgtttgttgtttcCTTTTGAATAAACTATGATGTTGACTACAATG

Function

symbol description
fignl1 Enables protein-macromolecule adaptor activity. Acts upstream of or within microtubule cytoskeleton organization. Predicted to be active in nucleus. Is expressed in head; nervous system; neural tube; tail bud; and vertical myoseptum. Orthologous to human FIGNL1 (fidgetin like 1).

NR:

description
fidgetin-like protein 1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K22766 FIGNL1; fidgetin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240315.3 True 2892 mRNA 0.48 2 22240693 22244448

Neighbor

gene id symbol gene type direction distance location
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding upstream 36479 22169484 ~ 22204214 (+)
apopt1 apopt1 coding upstream 74300 22162065 ~ 22166393 (+)
trmt61a trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528 coding upstream 120579 22107569 ~ 22120114 (+)
eif5 eif5,LOC108435020 coding upstream 184192 22049119 ~ 22056501 (+)
LOC103023340 NA coding upstream 209253 22024141 ~ 22031440 (+)
mocos mocos coding downstream 161357 22405805 ~ 22419342 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding downstream 185194 22429642 ~ 22451937 (+)
dlg5 dlg5,LOC107708441 coding downstream 222030 22466478 ~ 22553458 (+)
znf503 znf503,LOC103355656 coding downstream 1047662 23292110 ~ 23295682 (+)
LOC103038538 LOC108444215 coding downstream 1164650 23409098 ~ 23414421 (+)
G218335 NA non-coding upstream 97517 22137863 ~ 22143176 (+)
G218331 ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148 non-coding upstream 134156 22099516 ~ 22106537 (+)
G218298 exoc3l4 non-coding upstream 222876 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 275660 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 276268 21964159 ~ 21964425 (+)
G218364 NA non-coding downstream 27442 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 151644 22396092 ~ 22399515 (+)
G218434 NA non-coding downstream 181679 22426127 ~ 22426436 (+)
G218450 NA non-coding downstream 208507 22452955 ~ 22453182 (+)
G218451 NA non-coding downstream 212385 22456833 ~ 22457223 (+)
G218351 NA other upstream 21833 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 142434 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1825050 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 2166350 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2895289 19323906 ~ 19345404 (+)
kcnma1 kcnma1,LOC108263740 other downstream 319350 22563798 ~ 22818114 (+)
G218651 NA other downstream 1452129 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1736687 23981135 ~ 24028981 (+)
G218758 NA other downstream 1814763 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 1820047 24064495 ~ 24071626 (+)

Expression


Co-expression Network