trmt61a (trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528)


Basic Information

Item Value
gene id trmt61a
gene name trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22107569 ~ 22120114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240331.3
ACACTGCACATTGATATGTGCTTCTTACCTGCactgacctaaaaaaaaaaagtatgtgtttTTCATAACCAATCTGTTTTTGGGTGCATTAAATAGCATGAGAGCACACAgtctttatttgtgtttttgtaaacGTGTTAGTGGCCagtaattataaaacaaatcttaatgataaacatgttaaaatataaacaaaataatcacCTCTGATATTTCACCCTAATTCAGGTATCTAAATATTGCTGCCTAGACTTCTACTGGAAGCATGGTAGCACgatttgacagggtagcacaactcgacaaaACACCGGCTCAGACTTATACGTCATTTTTCCGCGACACGTGAGAAGCGCATGTGTATGAACTCCCGATTATGCTCTGAACACTTCGTTGTCGTTCTATAATAATGGTGTATTAAAAACACGTTAATCAACAATAGATGCTTATTAGGCTTCTAAAACCAGTGGTTTAGTCTATCGTTCTGTTGACACTGCGTTACACTCAGACACGTGTTCTACTGCCTGCCTGAGCGACAACATAAACCACAAATAAATCCTCTTCAACAGAAGAAGCGTTTGGTTGGAGCTCATTCCTAAAGATCTCATGAGTTTTGTGGAGTACTCCGAGTTCATCAAGGAAGGAGATGTGGTCATTATCTTCCTTGGGCATGAGTCCATGATGCCCATCAAAGTAGAGGCTGGGGCCCAAACCCAGACTCGATATGGAGCTATTCGCCACTCTAGTGATTTAATTGGGCGACGGTTCGGTTCTAAGGTGACCTGCAGTAAGGGAGGATGGGTGTATGTGCTGCATCCTACTCCTGAGCTATGGACTGTGAACCTGCCTCACCGAACACAGATCCTCTACAGCACAGACATTGCCAACATCACACTGATGCTTGACCTCAAACCAGGCTCAGTCGTCTGTGAATCAGgTACGGGCAGCGGCTCCCTCTCCCATGCCATTCTCCGCACCATTGCCCCCAGCGGCCACCTGCACACGGTAGAGTTTCATGCCCAAAGGGCAGAGAAGGCTGCTCAGGAGTTTAGAGACCACAAGGTGGCCCATCTGGTGACTGTCCGAAACCAGGACGTGTGTAAAGAGGGTTTTGGTGTAGTGGGTGTGGCAGATGCAGTCTTTTTGGACATCCCCTCTCCATGGGAGGCAATTGTACATGCCAAGAAAGCCTTCAAACGCAAGGGGGGTCGCCTGTGTTCATTCTCACCATGTATAGAGCAAGTCCAGAGAACATGTGAGACACTACTGGAACAAGGCTTTGGGGAGATATGTACTCTAGAGGTTCTTCAGAGGGTGCACGACGTCCGCTCTGTCACTATGCCCTTAGTCTACCTTGGCCCAGAGGATGGAGGTCCGGAGAGTGCCAAAATGACCACTGACCCCGCTGCAGAGGAAGCCCGACCTGTAGCAAACCCTGGCTATCAGTCAGTAACCTGCCGGACTGCCACACCCCCTCGGGAAATGGCCGGACACACAGGGTACCTCACCTTTGCTACCAAACCACGGGGCTAGAGATCGCCAGGCTTTTGAAGAGTGTTTCTGAACACACTGAATAGTGATCCAGTATGGGTCTGCTGAGTGTACACAGAAGCCTAGTACTTCTGTTCTCTCATTGACTCTCATACTGCACGTGAACACACCCTTCCTCGGCAGTGCTTCCAGGCTGCCTGGTGGTATTGGTCATAAAGTTTAATTAAGGATACCTGAGAAGGTTTTATGTaatcaatcagatctgtgcgaACATAGATGTTTGCCAAATGAGTGAAAGGTGAGCTAGATAAGAGTTCATCCTCCTTAATGCTAGTCATTTACAGTCATATTATACTAACACTTCTTAAAATGTACGGCCTTTTTAGTTTTGTCAGTTTTTGTCCTTTTGTTACAATAaaattcaaatgaaaaaaaaaaaaa

Function

symbol description
trmt61a Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; lens placode; midbrain; optic vesicle; and solid lens vesicle. Orthologous to human TRMT61A (tRNA methyltransferase 61A).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0031515 tRNA (m1A) methyltransferase complex cellular_component
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity molecular_function

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240331.3 True 1929 mRNA 0.46 4 22107569 22120114

Neighbor

gene id symbol gene type direction distance location
eif5 eif5,LOC108435020 coding upstream 51068 22049119 ~ 22056501 (+)
LOC103023340 NA coding upstream 76129 22024141 ~ 22031440 (+)
LOC103024407 NA coding upstream 96600 21988878 ~ 22010969 (+)
LOC103025447 NA coding upstream 187985 21911958 ~ 21919584 (+)
LOC111196000 NA coding upstream 253149 21851372 ~ 21854420 (+)
apopt1 apopt1 coding downstream 41951 22162065 ~ 22166393 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding downstream 49370 22169484 ~ 22204214 (+)
fignl1 fignl1 coding downstream 120579 22240693 ~ 22244448 (+)
mocos mocos coding downstream 285691 22405805 ~ 22419342 (+)
anxa11 anxa11,LOC108263209,LOC107708439,LOC107678500 coding downstream 309528 22429642 ~ 22451937 (+)
G218331 ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148 non-coding upstream 1032 22099516 ~ 22106537 (+)
G218298 exoc3l4 non-coding upstream 89752 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 142536 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 143144 21964159 ~ 21964425 (+)
G218279 NA non-coding upstream 151161 21956027 ~ 21956408 (+)
G218335 NA non-coding downstream 17749 22137863 ~ 22143176 (+)
G218348 NA non-coding downstream 103460 22223574 ~ 22268752 (+)
G218364 NA non-coding downstream 151776 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 275978 22396092 ~ 22399515 (+)
G218434 NA non-coding downstream 306013 22426127 ~ 22426436 (+)
mark3 mark3 other upstream 9310 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1691926 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 2033226 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2762165 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 2890580 19160653 ~ 19216989 (+)
G218351 NA other downstream 97185 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 443684 22563798 ~ 22818114 (+)
G218651 NA other downstream 1576463 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1861021 23981135 ~ 24028981 (+)
G218758 NA other downstream 1939097 24059211 ~ 24063788 (+)

Expression


Co-expression Network