LOC103023340


Basic Information

Item Value
gene id LOC103023340
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22024141 ~ 22031440 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240335.3
CACACGAGAAGCTCAGTAGTAGTGGGCAGTAGTATGGCATCTTGGAATCCTTTTAGGAGACTGTTTGCCTGTTATGATGATGTTGATGgggaagagaaggagaaagaggGGAAAATGACTGCTGGATCACTTGCAGATAGAGCTGTCTCCTCTTCTAAACCCAAGTTTCTAAAATTACCAAAATTCTTCAAAAAGAATAATGTGCAGAATAATGACATCAAATGCAAAGAGATTCCACTGACGTTTAAGCAGAACCTAAATGAGAAGCGTTTTTTAGTGGCAGCAAAGCAGCTGATAAACCGTGAAGAGCGTCTGTTCTCAGTGAAGCAAGATGGGGTGGGGTCCAACAAGAGCCGggtagaggaagaggaggatgatgaggaaAGACTGAGAAAAGACTCTGAAGACCTTTTTAAGGCAGTATGGTATACAGTGGAGAATACCTTCGAAGtccaaacagagaaagagaaagaggcgCTAAAACAGGCAGTCCTGGTCCTACAGCAAGAGGACGAGCAGGACAGAAGATGGCAGGGAgttggagaaaaagagagacctCTGTGGAGACCTCTGTGCTGCAGGAAGACACATGGCTCCCTGCTTCAGAACATGGTTGAGCGGCGAATGGATGAGGCAATGCCTGACTCAAGTGTTGGTATTCAGTCTTCCATTCAGAAGGAGATCATAGGCAAAGGCAAACGACTTAAGGAGGACCTGCTACATGTGGCAAAGCATGTAAGATGCTGCTACCCTGAAGACAATGTGTGCCAACTTTATGCCACATTATACCATCAGGCGTTTAGCACCAAACTCAGAGAAATCGCTGACTTTGGACTGAGTGATGAAGATTGTGAATATGTACTGCAGTGGGTGAATATACATTACCCCAGtatTCTGGAGAATAATGAGTTCACTGGGTTTATCACATATAAAGAACTTGAGAGACTTCTGCCAGAAAACACACTTACATCCTTGGAAGAGCAGGTTTTGATCAAAAAAGAGAATGAGGTGCGGAAATGGTGCCAGAATATtttaagagaggaaaaaaaagatccTGAACTGAGAGATGGATGCTACATCAGCAACCTGGCCATTGACACGATTGGGTGCATCCATGGTGCTCTAAAGTCAACACAGGAAATTTTGGGCTCTTGCTCGAAGCCTGAGAGGATCACACATACAATTAAAGACTTCCTTATTAAttaTCAGACTTTCCTTGAGAACATCATTGAGGAAAATCAGGCTAATACTGATGCTGTTCTGAAGGCCAACCTTCTCTGTATTAGACAGTTCAGggaACACATAACAAAGCACCAGGAACTCTTCCCTGCACCTATCAGAACTGAGTGTATGCACTTGCTGATTACCATTAGAGAAAAAATCCACAGCTACTTCACCAAGCCTATACATATTTCTCTCAAGGTGAAGTATACCAAACTAGGTACTCGAGAGTGGCTTAAAAACAGTGAGAATGTGTGCACTGAGCTGCTTGATGGACTGAATGAGCACATTCTGAATTTCACAAAATTGGACAAAACATGCCTTAAGGAGCTGCTTAGTCAGCTTCACAAAGAAGTGCTGGCGGAGTATGTAAGAAAAACAATGAAGAAGAAGATCAAACTTACAGATGAGAAGAAACAAGAACAGGCAGCGAAAGCATTACGGGACAACAGTCAGAAGATCCAGGCTCTGTTTTCAGAAGCTGGGTCAAACCTGGACGACCTCCGAGAGATCCTTCCAAAACTGGCCGAAGTTCTCACCCTAAAAGATCCACAGTTTATTGCATTAGAGATAGTGAAGCTATCTCGAGATTACCCCGACTTCAGTGAAGCCCACGCCTGCGCCTGGCTGTATCTCAAGGCAAACCTCTCTACCTCAGAccagaaaaatatcaaaaagaCTTTCTCAGAGTTCCGAGAGCCAGACTTACTTGATGGTCAGGACCGGGACCAGGACCAGGAACAGGACCCACTCTACTCAAGCAGAAATTTCTTCTCTAAAGTGCTATTAAACTAGCACTGCTTAATGTTGCAAAACAATCTACTGTCCTGTTATATTGGATTCTAGTTAGTTGAGctacatttaaagtttttttatgaaatgtacTGTGAAGCTACTTAAAacttaaagcattttttactgaatatattttttacatgattttgtgaataaataaatatttttaaattaca

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240335.3 True 2192 mRNA 0.42 13 22024141 22031440

Neighbor

gene id symbol gene type direction distance location
LOC103024407 NA coding upstream 13172 21988878 ~ 22010969 (+)
LOC103025447 NA coding upstream 104557 21911958 ~ 21919584 (+)
LOC111196000 NA coding upstream 169721 21851372 ~ 21854420 (+)
LOC103025756 NA coding upstream 172804 21827251 ~ 21851337 (+)
aifm2 aifm2 coding upstream 207843 21809671 ~ 21816298 (+)
eif5 eif5,LOC108435020 coding downstream 17679 22049119 ~ 22056501 (+)
trmt61a trmt61a,LOC107582491,LOC107698149,LOC107589545,LOC107678528 coding downstream 76129 22107569 ~ 22120114 (+)
apopt1 apopt1 coding downstream 130625 22162065 ~ 22166393 (+)
klc1 klc1a,klc1,LOC107708436,LOC107698151 coding downstream 138044 22169484 ~ 22204214 (+)
fignl1 fignl1 coding downstream 209253 22240693 ~ 22244448 (+)
G218298 exoc3l4 non-coding upstream 6324 22012145 ~ 22017817 (+)
G218286 NA non-coding upstream 59108 21964494 ~ 21965033 (+)
G218285 NA non-coding upstream 59716 21964159 ~ 21964425 (+)
G218279 NA non-coding upstream 67733 21956027 ~ 21956408 (+)
LOC111196027 NA non-coding upstream 79339 21941514 ~ 21944802 (+)
G218331 ckb,ckba,kcrb,LOC108444021,LOC107735686,LOC108434982,LOC107698148 non-coding downstream 68076 22099516 ~ 22106537 (+)
G218335 NA non-coding downstream 106423 22137863 ~ 22143176 (+)
G218348 NA non-coding downstream 192134 22223574 ~ 22268752 (+)
G218364 NA non-coding downstream 240450 22271890 ~ 22285011 (+)
G218421 NA non-coding downstream 364652 22396092 ~ 22399515 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 1608498 20335947 ~ 20415643 (+)
G217874 nkx2-3 other upstream 1949798 20020414 ~ 20074343 (+)
rrp12 rrp12,LOC106529656 other upstream 2678737 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 2807152 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 3177113 18837344 ~ 18847028 (+)
mark3 mark3 other downstream 29523 22060963 ~ 22098259 (+)
G218351 NA other downstream 185859 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 532358 22563798 ~ 22818114 (+)
G218651 NA other downstream 1665137 23696577 ~ 23708243 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 1949695 23981135 ~ 24028981 (+)

Expression


Co-expression Network