CI01000009_01061214_01063408 (KLF5, KLF5B)


Basic Information

Item Value
gene id CI01000009_01061214_01063408
gene name KLF5, KLF5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1060175 ~ 1063408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01061214_01063408.mRNA
ATCAGACAAGACATGGATGGATACCTGCCGCCTCAGTTTCACGTGTTATCAGACCATAAGAAGTTTTGTCAAGACAATTCCCTGACGATGGACCAAGGCGCGCCATACAGCATAAACATGAATGTTTTCTTACCTGACGTCACCTATCTACGAACCGGCATGTGCAGACCCGTTCGCTCCGCAACGACACAGATAAAGACGGAACCGGTGCATTCGTCTTTCAACTACTCCAGCTGCCACGGCTCCGCTGCGCCCGCCATGACGCACACAGAGTACACGAACCTCTACAGCCCAGCTGCGGAAACGGGTAACAATGTTTACATCAAGCACGAGACGCCGTCCCTCGAATTCCCAGAAGTTCCGCTGTTTCAGCTGTTGAATTCGGAGCTTGAGCCCAATGTGCCTGGAGGCCACTCTTGCACAGATTCCCACAATGCCGCATGCCCTCCGATGTCGACTTATAATGGTATTCACCCACCGCCCAATCATGTTGCAGAAAGATCTCTTTGTAATATGGGCAGCAGTGGATATTCTCTACCTGCCCAGTTTGGTCAGCATCCTCAGAAGAGGGCGGCCTATCTACCACCCTCCCCTCCCAACTCAGAACCGGGCAGTCCAGACAGGAGGAAAGAACTCATACAGAACTTATCGCCACCTCCGTCGTATGCTGCCAGCATGGCATCTAAAATGGCGTGTCTTACCCCTGGACCAGCACTTTCTGTTCAAACACAAGCAGTACCTGCCCAATACAACCGCAGGAACAATCCCGATCTAGACAAAAGGAGGATACATCACTGCGATGTACCCGGATGTAAGAAGGTCTACACCAAGTCTTCACATTTGAAGGCCCATTTACGTACTCACACAGGCGAAAAGCCATACAAGTGCTCATGGGAGGGGTGCGACTGGCGCTTCGCCCGTTCTGACGAGCTAACGCGCCACTTCAGGAAGCACACGGGGGCCAAACCTTTCCAGTGCGCCGTATGTAGCCGTTGCTTCTCCCGATCGGACCACCTGGCCCTCCACATGAAAAGACACCAGAACTAGAGCCGCCCGCTCTCATTGTTCTGACGGTGCCACGGGAGGGCTATCAGGACCTCTGTTGATGATACTAATTAGGATTTGGGTGTGTTGGTTAATCTTGGGTTTTGGCAGTTCATCAGGTACAACAGGACCAAACCCTGCCGTCGGTACGGCTCCTGTGGTCACAAAACCAGCTAATTGATGAGAACTTGGCTCATTTGCCAGATGGGACATTCTTTTGACATGTTTGTTTGTTTCTTCGTTTGTCTGCATACTTTGAGGTCATAATTTATGACATAACTACTTTTAATGTGCCTTTTTTACCTTGTAGAATTGAGGTGCCATGTAAAATATACAATGTGCAAGATGTTGTGGGCAGTTTTACTCCACTATAAAGGAATATTCTAGGTTTAATAATAAGCTAAGCTTAATCGACATCGTTTGTGGCATAATGTTGATTAACACAAAAATAGTTACAATTTGTTCCTTGTTTACTTAAAAAATATATAAAAAATCAAGTTTACGCTGAAGCACTTATAATAGAAGTGAATGGGGCCAATTTGAAATCTGAAGCTTATAATTTTATAAAAGCACTTACATTAATTCTTCTGTTAAAATTTGTGAATTATTTGAGCTGTAAAATTTTTATGGTCGTTTTGGGGTTCTTGAAGTTGCGTTGACATGGTAACAAAGTTACCTAAAATCACACTAAAATCATGTTAAAACATTCTTTACGTCTTGTGGCTATACAATTGAAACACTGAGAATTTTAACATTTACAAATTGGCCCCATTGAAATTGAGTATTCTGGTCTCACTAGTTCTGTCACCCGAGCTTAACTTTTATTGAACCCATAATATTCCTGTAAGTGACTACTCGTACTTGTATCACAAGGTAAATAATATCAAGATAGAGTCGTATTTTTGGTTGTAGAACCAAACCGCAGAACAGTCATGAGAATGTGAGCCACGAACGCTGAGTCACAATGCATTAAGGTCTCTTAGAAGCAGCACTTGATAAGAAACAGTGCTTCAGAAATTTGCCGGGTAATTAGAAAATTAAA

Function

symbol description
klf5b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human KLF5 (Kruppel like factor 5).
klf5 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cell-cell signaling via exosome and positive regulation of pri-miRNA transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09206 KLF5; krueppel-like factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01061214_01063408.mRNA True 2086 mRNA 0.44 3 1060175 1063408

Neighbor

gene id symbol gene type direction distance location
CI01000009_01039363_01051161 NA coding downstream 8620 1037813 ~ 1051555 (-)
CI01000009_01018746_01020434 NA coding downstream 39690 1018157 ~ 1020485 (-)
CI01000009_00995615_01005713 NA coding downstream 53732 995224 ~ 1006443 (-)
CI01000009_00981620_00988912 NA coding downstream 71123 981355 ~ 989052 (-)
CI01000009_00973935_00975204 NA coding downstream 83042 973303 ~ 977133 (-)
CI01000009_01112860_01113252 NA coding upstream 49204 1112612 ~ 1113252 (-)
CI01000009_01121956_01122628 NA coding upstream 57779 1121187 ~ 1125787 (-)
CI01000009_01128947_01131135 NA coding upstream 65476 1128884 ~ 1131161 (-)
CI01000009_01138569_01164523 NA coding upstream 74841 1138249 ~ 1164537 (-)
CI01000009_01208525_01212914 NA coding upstream 144966 1208374 ~ 1214517 (-)
G51949 NA non-coding downstream 4750 1012830 ~ 1055425 (-)
G51991 NA non-coding downstream 81006 978934 ~ 979169 (-)
G51982 NA non-coding downstream 93703 965889 ~ 966472 (-)
G51909 NA non-coding downstream 243778 816021 ~ 816397 (-)
G51933 NA non-coding downstream 256152 803756 ~ 804023 (-)
G52009 NA non-coding upstream 19911 1083319 ~ 1083582 (-)
G51960 NA non-coding upstream 31140 1094548 ~ 1095267 (-)
G51959 NA non-coding upstream 34818 1098226 ~ 1102385 (-)
G51970 NA non-coding upstream 40180 1103588 ~ 1104490 (-)
G51958 NA non-coding upstream 42422 1105830 ~ 1110232 (-)
G52098 NA other upstream 338524 1401932 ~ 1407627 (-)
G52410 NA other upstream 1488316 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1820280 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 2197795 3261038 ~ 3262843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037917 klf5b coding NC_007120.7 CM002893.2 30800876 ~ 30808073 (-)