slc25a28 (slc25a28,LOC107601050,LOC107719215)


Basic Information

Item Value
gene id slc25a28
gene name slc25a28,LOC107601050,LOC107719215
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 20008170 ~ 20019444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240378.3
TGTCACGCCTCGCTGCGCGCTCCCCCACGCCATCCATCCGGGACGGGAGTGTGTGTCGGGTGTAAACACCGGGGCGGTTAGCTAATGGAAGGCCACGGATGCTGGTAGACATCCAGCAGTGAGCGCTTCTCTGACCAGAGGACTGTGTGTCTGGTTGTTGATGGAAGCGGATGGTTTTGTGCGGAGGCGGCGGATGAGCGCGGAGACGCCGGGTGGGGACGCCGCTGTGGCCGGCGCTTCTGCGGGCGCAGAAATCCGTTGGCTCGGCGGCAGACTGTGGGGTGTTTCGGAGGGTATCGTTGGGAGTCTGGCGCCGCGGATTGGAGGAGAGGCTGAGCTCAGCGCGGCGCAGTACTATGGGCCTCAAGAAGTGTCAGAAACAGCCGAGCCAGACTATGAAGAGCTGCCTCAGGGCGCCTCCACCAGCACTTACATGTTGGCCGGAGCGGTGGCCGGCATTATGGAGCACTGCCTCATGTTCCCCATTGACTGTGTCAAGACTCGTATGCAGAGTTTACAGCCTGATCCAGCTGCCCGCTACCGTAATGTGATGGATGCTCTGTGGCGCATTGTGAGAACAGAGGGTATCTGGAGGCCGATCCGAGGCCTGAATGCCACGGCTGTAGGAGCAGGACCGGCTCATGCACTCTACTTTGCCTGTTACGAGAAGCTAAAAAAGACCCTCGGCGATGTTATTCACCCAGGAGCCAACAGTCATTTGGCGAATGGAGCTGCAGGATGTGTGGCCACTCTGCTTCACGATGCTGCCATGAACCCGGCTGAAGTGGTGAAGCAGAGGATGCAGATGTATAACTCGCCCTACCGTGGCGTGTTGGACTGTGTGCGCTGCGTGTGGCAGCGGGAGGGTGCGGGGGCGTTCTATCGCAGCTACACCACGCAGCTCACCATGAATGTGCCCTTTCAGGCGCTGCACTTCATCACCTACGAGTACCTGCAAGAGCTGCTGAACCCCCACAGACAATACAACCCCTCCTCACACATGGTGTCCGGCGCCCTGGCCGGCGCCATCGCCGCCGCGGCCACCACCCCGCTGGACGTTTGCAAGACGCTGCTGAACACCCAGGAGTCTCTGGCCCTACACTCGGTCAGTCAGAGCGGAGGACACATCTCAGGCTTGGCCCATGCCTTCAGGACAGTGTACAGGTTGGGCGGCCTGCCGGCTTACTTCAAAGGCGTGCAAGCGCGGATCATCTACCAGATGCCCTCCACCGCCATCAGCTGGTCCGTCTACGAGTTCTTCAAGTACGTCATCACCAAGCACCAGCACGAGCGGTGGAGGAGCcagagggatggagagaagtAGCCGCTTGCACGCTATTTAGTCCAGCCTTTCTCTCAGCAGCTCgtcttctgtctctgtctctttctcctgCCTACAATCTCCTGCTTGTTGCACCAACGACCAGCGTGTTGCATTACGCTGCAGAGAAACTGGCCGGCTGGACTGAACCTGAATTAAAGATACGCACATAGAGAATCCTCTCTCACATTTCTGTTTACCTCCTATAAGAGCAATTTAATAACACCTAGGGCTTCATGTGTGATTCATGAACCAGACACACTATGATGGGTCTACTATGTTACAGTCTAAACAGTGTAGTCAAGTCATGGCGAGTTGCACTTACATTTCAAGAAACCCAAATATGTGACTACTTCTGTTGCCACTAGGGGGCATCAGAAGCCActtcttttaaaatgaataactaGAAAGACGCTAATGAAGTGGAGCTATCCATTATAATAAAACCTTGGTGTAGTGGAAAACTCATAAGCTGGGGAATTTAGCATAGTGTTTCACATCAGAATTTGTTTCAAATGTTGCCCAAACGTCTACATAGAAAGATGCAGATTTGCTAAAACCAGGAATTAGTTTTATTCAGAATGAAAGCAGTTGAAAATGTTAAATCACGATCTAAATAACTTATTGCAAACTTTATTCAAATGGTCAAAGGACTtgtcaaatgtatttttgtacaaTCTCTTTAATTAAGCTGAGTTAACTGTATTTGATCCAAAGCGTGCTCTGACAGAAACCTGGGCTCCACAAATTGCCATCATCAGTATTGAATTGGGTTTAAAActctaaaggaaaaaacaaacatgacTAAAAGCAGCTAAAAGAAAGCCCTTACCTTCTATATGAAAAAAGGCagatttaaatcagttttaaatcagTAGTTTTAGGCACAAGAAAactgttacaaataaatatataaatatattttttctcagtcTATTCTTTCTTGCACTGTTCACACTAGTGGCCAATCAGAAGCcgtaaattaatttaatgtagcCTACAGTTCCCATAGGCTGAAAGGTAATGGGAAGAAATATTTAATGGGCTCTCTGTCAAACGTTGTAGTTGGTTTTTGGCTGAAGTACGTTGATCTGGATATGGCCCTCCTGTTGCTTGGCTTGACTACATCTGAATGTTACGAATTTATGAAATCAGTCCCTTTGACATCTGTCTACCTTGTTCCCTTATTTCTCATCTTCAATAAAGTAGCAGTGCAGTGACCTGCCTGCATAAGCTGGA

Function

symbol description
slc25a28 Predicted to enable iron ion transmembrane transporter activity. Predicted to be involved in iron import into the mitochondrion. Predicted to act upstream of or within ion transport and iron ion homeostasis. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A28 (solute carrier family 25 member 28).

NR:

description
PREDICTED: mitoferrin-2-like

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15113 SLC25A28_37, MFRN; solute carrier family 25 (mitochondrial iron transporter), member 28/37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240378.3 True 2560 mRNA 0.50 4 20008170 20019444

Neighbor

gene id symbol gene type direction distance location
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding upstream 203439 19774316 ~ 19804731 (+)
marveld1 marveld1,LOC107665576 coding upstream 620179 19384149 ~ 19387991 (+)
mettl18 NA coding upstream 633359 19372573 ~ 19374811 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding upstream 692146 19280170 ~ 19316024 (+)
LOC103036761 LOC108442312 coding upstream 738744 19263976 ~ 19269426 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 71767 20091211 ~ 20101103 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 126398 20145842 ~ 20222597 (+)
hps1 hps1,LOC107719232,LOC107601045 coding downstream 217616 20237060 ~ 20251768 (+)
ankrd2 ankrd2 coding downstream 242432 20261876 ~ 20266780 (+)
LOC103033039 LOC103033039 coding downstream 272707 20292151 ~ 20295951 (+)
G217868 NA non-coding upstream 962 20006953 ~ 20007208 (+)
G217861 NA non-coding upstream 2723 20005052 ~ 20005447 (+)
LOC111195994 NA non-coding upstream 201087 19804810 ~ 19807083 (+)
G217809 NA non-coding upstream 253103 19748866 ~ 19755067 (+)
G217800 NA non-coding upstream 351119 19656844 ~ 19657051 (+)
G217875 NA non-coding downstream 55417 20074861 ~ 20075913 (+)
G217887 NA non-coding downstream 63157 20082601 ~ 20082817 (+)
G217902 NA non-coding downstream 177360 20196804 ~ 20202426 (+)
G217978 NA non-coding downstream 423565 20443009 ~ 20443278 (+)
G218022 NA non-coding downstream 1109993 21129437 ~ 21134440 (+)
rrp12 rrp12,LOC106529656 other upstream 662766 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 791181 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 1161142 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 1263843 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 1690942 18311893 ~ 18317228 (+)
G217874 nkx2-3 other downstream 970 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 316503 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2041519 22060963 ~ 22098259 (+)
G218351 NA other downstream 2197855 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 2544354 22563798 ~ 22818114 (+)

Expression


Co-expression Network