LOC103037144 (LOC108443489,LOC103368019,LOC106916418,LOC106964416)


Basic Information

Item Value
gene id LOC103037144
gene name LOC108443489,LOC103368019,LOC106916418,LOC106964416
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19774316 ~ 19804731 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240382.2
tccctccctctctcccgcAGATCTGCTATTGTCCCGCGAGTGGAGACGATTTCAGCACCGGGACACATCCTCCCGCGTCTCATAGCAACATGGCGACAGAGTTCCATAACCTTCAAGATCTCAGGCACACTGCATCACTGGCCACCAAGGTGTTCATCCAGAGGGACTACAGTGAGGGCACCCTGTGCAGATTCCACACCAAGTTTCCAGCAGAGCTGGACAGCAGAATTGAGCGAACACTCTTTGAGGAAACCATTAAGACGCTCAATAACTACTATGCAGAAGCGGAGAAGATTGGTGGTCGCTCTTACCTGGAGGGCTGCCTGGCCTGCGCCTCGGCTTACATCATCTTCCTCTGCATGGAGACACGATATGAAAAGGTCTTAAAAAAGATCTCCACGTATATCCAGGAGCAGAACGAGAAGATTTATGCACCCCGGGGCCTCCTCATTACTGATCCCATCGAGAGAGGGATGAGAGTAATAGAAATATCCATCTTCGAGGATCGCAGTTCCAGCGaatccagctccagcagcagcaccacttCCAGCAGCAGTGCTCGGTGACTGGAGGAGCAGCACCAGGGTTACGGGTATCGGGGGACCAGGGGCCCCCATAAGATTCGCATGTTGAAACATGAAAGCACCAGATTCTGAACGGAGAGAGGAAGTATCTGCCAATTATATACCTTTTCATCTCTGTATCTTCCTTGCAAAGCAAGGAGCATAACCTCACAAACTGTATAACATACACACTTAACCTTTCCACACCCTGTTCCCTTCATTTATACCAGTCAGTCCTTTGCATTTCCTTTCACATTCAACAACTATGTGCACTGGTGTAGAGGTGTAGAGTAGGGAATGCTTTACGttccattaatttttttttttttttttttatgtaattcgCACCTCTTTAAAACATGACAAATGTCTTTAACATTACGTATGATTTTTTCTATATAGATTTATCCAAAAGAAATGGTCCAAATTTTGGTTTGGAATAAGATCTTGCTTTATTAATTGGTTACAGTAAGAGGTTTTGTTATGACAGCCTCGGTATACTTTAATCAGTACATCGTTTCCTTAAGGTTACTGTTTGGATAGCCTTCTATTCCTGTCCATTTCGGGAAACGCGTTCGGTTGATACTGGACGGTGGCCGagttcttcttgttcttctacCTGGTCTTCTTTAGAGGCACTGATGCAGTTCACTGCCATTCCTGACCCCATACAGAGCTCGAGGCCTCTATTCCCTCAGCCAAGTCCACCATTCACCTGTGGCTCAGTGGCTCAGTGTTCTGCGGTGTGGGCAGCATGCCCAGCTGGACAAAGCTCTCCCAGCGTCTCACCTCATTGGGAATGCAAGCAAGCTTTAGCCCTTCTGGGGCCTTTTTGTCTCTATGAGATGAAAGCTACCCATCATTTCTGCTTGCACAAAAAAGCTCCGTAGTCGATGAGGTGAATAGCGAGACAAACCAAGGTCAGCCTTCCAAATGAACATCAGACGAAGCACATTTAGACAGATATGATTCACAGGACAGCTCCTTAATACGGTCCATTCAGCAGAACAGCTTTGAAGTGATCATGTGTTATGTTGTTTCTGATGCAGTTGCTGCTCGGttcattttttatacattaatgaTAGCCTCCAGACCAGAATTTATGCTGCATCTTCTGCATGTCTGAAAGCACACTCCTCACTCAAGCTTAGTCTGCAGAAGCGTAATAAAGAAATCCACGATTTCATGACAATATTCAGACACTCTGTGTGCAATATGATAAGATTGAGAACAGAGAAGAATAAGAACAGATTGTTTTACGATTGCAGTTTTCTCTGCCTGCTCTTTGATCTTCATTAATTTAGTGGTGCGcacacagagaactctgcagACACAACATGGAGTTCAAAGCAAGTCGGAACAAACAGTGCTGGAGCGATTTACAGTATGAATAGCAGTTGTTTACTCAGATTTGAAAGAGAGGCTGATTAGGCTCAGAGCAAATGGAAATGTGGGAGATCTTTGCACCAGAGGTCTTTGGAAATgcaattctttttttgtgtttttatttttttacatcctTCATTAACCTGTATGAATACATCTCATgattttatatactgtacacttcTTGTCGataaaatagttgcacccagaaggaattaACATTGCCATACAGGCGCTGTGACAGTCGAATGAGGTCTTGCAACCAGAGATGCTGTTCAAAACTCCTCCCCTATGGCAGGacaacattaggaacctctacaactcaatgctgagacatctggcatgttgcattaataatttttatcatttattgttcttggTAACCTATATCTTCTTTCTAAGTATCACTGCAATCCAAcaattccttctgggtgcaactatgtGTATTCTATTGCAACTGTTTATTTGACGAtgagtgtatttattattatcattatcattattatttattaaagaatgtTGATCCTTGTACAGTATGTACTGCATATGAGTGCAAACATACtgcaaatattatttattatattctctAATACACTATATTCTATTTTCACATAGCAGAAATTGAGCTTCTCATCACCATCATTGCAGTTCTATACATGGATACtgacattctttatttttacctgAATTTATGTTGCTTGTTTAAGTGTATTAAGATAGTTCAAGCATTTAGTGTACAGCtacctttatttctctctctatatatacatatatattgt

Function

NR:

description
PREDICTED: golgin subfamily A member 7B-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240382.2 True 2728 mRNA 0.42 5 19774316 19804731

Neighbor

gene id symbol gene type direction distance location
marveld1 marveld1,LOC107665576 coding upstream 386325 19384149 ~ 19387991 (+)
mettl18 NA coding upstream 399505 19372573 ~ 19374811 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding upstream 458292 19280170 ~ 19316024 (+)
LOC103036761 LOC108442312 coding upstream 504890 19263976 ~ 19269426 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 630080 19095750 ~ 19144236 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 203439 20008170 ~ 20019444 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 286480 20091211 ~ 20101103 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 341111 20145842 ~ 20222597 (+)
hps1 hps1,LOC107719232,LOC107601045 coding downstream 432329 20237060 ~ 20251768 (+)
ankrd2 ankrd2 coding downstream 457145 20261876 ~ 20266780 (+)
G217809 NA non-coding upstream 19249 19748866 ~ 19755067 (+)
G217800 NA non-coding upstream 117265 19656844 ~ 19657051 (+)
G217790 NA non-coding upstream 153669 19611239 ~ 19620647 (+)
G217787 NA non-coding upstream 175073 19598978 ~ 19599243 (+)
G217784 NA non-coding upstream 189911 19584081 ~ 19584405 (+)
LOC111195994 NA non-coding downstream 79 19804810 ~ 19807083 (+)
G217861 NA non-coding downstream 200321 20005052 ~ 20005447 (+)
G217868 NA non-coding downstream 202222 20006953 ~ 20007208 (+)
G217875 NA non-coding downstream 270130 20074861 ~ 20075913 (+)
G217887 NA non-coding downstream 277870 20082601 ~ 20082817 (+)
rrp12 rrp12,LOC106529656 other upstream 428912 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 557327 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 927288 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 1029989 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 1457088 18311893 ~ 18317228 (+)
G217874 nkx2-3 other downstream 215683 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 531216 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2256232 22060963 ~ 22098259 (+)
G218351 NA other downstream 2412568 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 2759067 22563798 ~ 22818114 (+)

Expression


Co-expression Network