marveld1 (marveld1,LOC107665576)


Basic Information

Item Value
gene id marveld1
gene name marveld1,LOC107665576
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19384149 ~ 19387991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240386.3
cctctctcttttttctctcagactgggacagagagagggatggcTAGAGCTTTCAGGCCGGCCCCCTGCTCCCAGAGCTTCCTCTTCCAGCTGCTGGGTGAAAAAGAGGGGGGAGGAAGACAAAGTTTCTCCAGCTGCCACAGAGGAAACGGAAGGGACGAAACGCAGAAATCTAATTTCAAAACCTCCAGGCTGTGCTCAAGCAGCGCTGTGTGcgttcctcctcttcttctttatctTTTACTCGCCTCTCCAGTAATCTCCAGTGCTGCTTTTCTCCTATACCACCATCTCCTggtatttttttccttctgctTGTGGCAAAGAGCCTCCACCCCAAacagaagaaagagaggagaactgctcttctcttctccacATCAAGGAGATGCCCCCCCAGCCACAGGTGAGGAGGAATTTCCTGGAGTTCCTCAAGAGCTTTGTCGGGATTGTACGCATTCTCCAGATTCTGCTgggagctggtctgtgggtcACCATCGCTGCCAACAAGTATGAGGGCTCCGTCCACTTTGTGCTGTTTGTGGCCGTGTTCTTCTGGCTTCTCACCCTGGCCCTCTTCTTCGTCACACTACTGGACAAGCAGGACCTGGTCCCCATTGTGGGAGGAGAACGCTGGTTGTTAACCAACATGATCCATGACATTGCTGCCACTTTGCTCTACTGTTCTGCCATTGGCATCATGATCTACAAGACAAAAAAGAACTCCTACTGCAATGTGGTACAATACAGGCCCCCGTGCTCATACAAGGTCTACCTCACTGGCTCTGTGTTTGCCTGCCTCACTGCTGTTGTCTATCTGCTCTCTGCCATCTATGGCTCCTGCAGAAAGTGCCGGGGTGAGCAGACTGTGGTGTAAACAGCCCAGTGTAGGCTCAGgacaatggatggatggacaggggGAGGGAGGCTTcccctctatctctttttctctgagaGAAAAAAGGGGCCCTTGGTCCTTCCCCAGGTCGCACACAGCTCACAGCAGGCTTTTGGAGACTGGAAAAAATTCTTTTCTCTTAAAGCAGAGGTTTCAGTGCCCTTGTCTCAGGCTTCCAGGTTTGTtgattttatacagtaatttaaAGTCAGAGAACTTCAGCAGCCGTGCTAAAACATTATACGTATTTTATGgttgtgtatgtttttgtacgtttttttatatatatatatgtataagagTTCAAGCTACTCGATGATCCATGTAACAAAGAgtcatgttttccttcatagtactgttccaatgaaaaaaaactcacaaacaGCAGTTTGTTGCCTCATGTAGATATGCCAAGTTTGTAGCATTTTGTTTGCAGTGTCTGTCTTCATGATCTTGTCATAAAGCAGTGCCTTCTACACGACTAAATCTGCATACTACAAATGTGtgggtgtaagtgtgtatataaaaagtatttttctgcTTAAAAAGAGCATAGCAACGGTTCTTGTAAAATGTCTTCATTCAAAGTACATAATAAGTCTTGTTTAACATGAAGCAATTCTCAGTCATGAAGCAAATGTCTAATACTGAatgaataaaaaggaaatatattaattctcGTTCTCTGTAACTGTGAGTCTGAGATTTGTAAGAGGTAGCTGGCTACGCTAGCCAAGCACAGATAAGCCTCTGAGACAACAGCCATTATAACATTCCATCACAGTCAGACTGCTGCCATTACACACCAGCGCAACAGCAGCTGAGTACCAAGAAAGCAATGCAGgcttttgtattgtattatgaatggtttagcctttaaatattaaacttgtgtattGTTTAATAAGAACGTTGTCCACAGAGAAACCCATAGTGTATCTGTGACTTATAACCATGAACTTTTAATCCATGATCTCTCCAAAGGGAAATGAAAAGGGGAGTTTCTTACTGTAATCACAaaagggagggaggagggaTGTACTTCCAgagaagtgtaaaaaaaaggccTTTACAATGCTGATCTCAGGCAGATAGAAGTAAAATAAAGGGAGTAAtagttaataatataaaatcaaggTTTCATTGAGGCCATAGATAAATTACATTTGgatccataaaaaaaacatttctgtaaTAAAGATTTATGTGAGTGCAAAAAGCCTTCACAACACAAAGAAATTTTCTTCACATTCCCAATAAAAGTGTTCCTCCATAATTAGTTGAATATTCACACAAAGAACAATTTGCAGCACCtttcttttaaatgtgtaattcagccttttttcctctttttactacattaatttaattaagacaCAATGTACCCAGCTTGCAAAAGTGCACTGTTAGAGCTCTAAACTTTATCTAAAATCATTTttcaaaaatcttaaaaatccAGTTAAATGTTTTCAGTTGTTACTGAAGTTAGTTGAGATGCCCCATTTTGTTGCAGTCCTGTCCATCTGTTAATGTCATCAGAAGCAGCCACATGGGGTAAGCATGTTACGATCTGTACCTCAGCTGCAAATGGCAAAATCCCACTGCTTTTAACACAGGGGTGTCAAACATATGGCCCGCAGTAAAGATTGTAATCCAGCCATCCACACAAATGTATGATCCATGTTCTCAGTGTCAATCATTCTCAGAGTTCAGccacttaattaaaaaaaaatccactttacCAAAAACTTTACTCCTGGACAGCATGACTCCATAGCTCTCCATACAGCAGATTACATATTTTAGCTAGGTGTGGAACAACAGAAAGATAACACCCAGAAGAAGAGCCAATAGGAAACCAGTTAAAAGTCTCATATTTGAAAGGGGTGGGACTTGTTAAACAGTGAAACTCAAACAGAATTTTGATTAAGTAAGAAATtcttaaatgaatgaatgtgaaCACACTTGTTCACAGGTGTTTCACATTTCATTGACTTTATTCTTAATTCTTTTTTACTGCTACCACATGAATAAAGAACCTGGTAttctcaaaaaaatattatctagCACAGTTAGAGCTTTGTATgaatctgtgaaaaaaaaaaataataataatgttgcaTTTATGTGGTGTTGGAATGATGGTAAAAATGAGTTCCAGACTAGAAAGTTGCACATGAACACTCTCTCAAATTGTTTTGATACCCAAGTTCCCAAATTGGGGTGACCTTTAACCTTTTAGCGTGGCTGAAATAGATTAGtattaaattgtatatataGAATCAgtattaaatgttacataattcattatttcattatttattcttTTGATCTGTAATCTGTGTTCATTTAACTTGATATGGGACATTGTTAGTTATCCTTCTATCCATAGCAAATTGACTACTCTGCTAGCACAGACTTACCAAGAAACAGATGTGGCTCATTACCTTCACTGTGTTTGCCAAGCCTGCTGTAACACAACAGAACAGGCTCAAGGAGAACACAGAGTGCCACACACCCACCACAGATGGACAACCTTCTGAGGAAGACAGCCTTGTTGATGAAGATGTAGAGCTGATACAACACAGAATGCAAAGGAAATTTCCTGAAAAATGTACAAGAACACTGAACTTCTTGTGTATAGCAAAAGGGgctatgcatatatatatgagctatatatgaaaaaaaaagtgtatgaagAGACTCAATTCTTCTACATCCTTCACATCCCCACTTGTAACTATGACTCTGCTGTCTGAGAGCGGCAGTGAGCCTCTCAAATTCCTACGAGTTGGCAGGGCTACATAAAGCCGGCTCTGTTTCTCACAGTGTGTCAGTCTCAGTCCTTTACTGTTCAACTCTCTGGCTCTGCTCCGTTTTGGTGTATAGAGCTCATTTCTGCGTGGGAGTTTTCCTAAACAAGACCATTTGCTTTCTGTCagaaa

Function

symbol description
marveld1 Predicted to be a structural constituent of myelin sheath. Predicted to be involved in myelination. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in several structures, including neural crest; neural plate; neural tube; pharyngeal arch 3-7 skeleton; and tail bud. Orthologous to human MARVELD1 (MARVEL domain containing 1).

NR:

description
MARVEL domain-containing protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240386.3 True 3843 mRNA 0.40 1 19384149 19387991

Neighbor

gene id symbol gene type direction distance location
mettl18 NA coding upstream 9338 19372573 ~ 19374811 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding upstream 68125 19280170 ~ 19316024 (+)
LOC103036761 LOC108442312 coding upstream 114723 19263976 ~ 19269426 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 239913 19095750 ~ 19144236 (+)
LOC103033826 LOC108443358 coding upstream 294918 19080725 ~ 19089231 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 386325 19774316 ~ 19804731 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 620179 20008170 ~ 20019444 (+)
got1 got1,LOC107665595,LOC107586067,LOC107702745,LOC107601049 coding downstream 703220 20091211 ~ 20101103 (+)
hpse2 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107719234,LOC107586094 coding downstream 757851 20145842 ~ 20222597 (+)
hps1 hps1,LOC107719232,LOC107601045 coding downstream 849069 20237060 ~ 20251768 (+)
G217715 zdhhc16,LOC108443446 non-coding upstream 18894 19362678 ~ 19365255 (+)
G217696 NA non-coding upstream 110995 19272937 ~ 19273154 (+)
LOC111195980 NA non-coding upstream 152389 19219513 ~ 19231760 (+)
G217472 NA non-coding upstream 444246 18939025 ~ 18939903 (+)
G217442 NA non-coding upstream 634069 18747392 ~ 18750080 (+)
G217768 NA non-coding downstream 110073 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 196090 19584081 ~ 19584405 (+)
G217787 NA non-coding downstream 210987 19598978 ~ 19599243 (+)
G217790 NA non-coding downstream 223248 19611239 ~ 19620647 (+)
G217800 NA non-coding downstream 268853 19656844 ~ 19657051 (+)
rrp12 rrp12,LOC106529656 other upstream 38745 19323906 ~ 19345404 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 167160 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 537121 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 639822 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 1066921 18311893 ~ 18317228 (+)
G217874 nkx2-3 other downstream 632423 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 947956 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2672972 22060963 ~ 22098259 (+)
G218351 NA other downstream 2829308 22217299 ~ 22218860 (+)
kcnma1 kcnma1,LOC108263740 other downstream 3175807 22563798 ~ 22818114 (+)

Expression


Co-expression Network