rab23 (rab23,LOC107699166)


Basic Information

Item Value
gene id rab23
gene name rab23,LOC107699166
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36361444 ~ 36381976 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247328.3
GGTGGTCGTGTTTCTTACTTCATGGCACAGTGAATTTCACAGGGGCATCACATCCAGAAAAActccttttaaaaaatatatacatttcttaaTAATTTACCGCTCAGTTATTTAATAACACTTGAATAAAAGGCTGAGCGCTGTGTGGACGGGGGGAAGCGGTGTGAGTGTTCGCTTAGGGCCGTGTCGCGACGCTGTGAGCGGGGAGAGCCGGAGCACGGAGAGCCGCCCTGGATACCGACCCGCCCTCCGCCCGCCGCGCTCTGCCTCAGATACCCGAGCCCGCTAACCCGGGCTACTGCAGCGAGCTGCCCGCTCTGACACAGCCCGCTACAGCGCGGAGGAGCTGAGGGCCTGAGTATATCAGAGCTGGGGGCCGGTTAGCTGCTCTGACCCTCGCTGCGGTTCTCCACAGACTTTAACTGCGGTTCCGCTGAACTCAGAATGTAGCAGGAGCCCGGGAGGCGGCGGAGTAACGGCGGACGCAGGACCTCTCACGTGAATCTACGATAAACCAAGTTAAAACAACACAATCCAGCAAGTCAGGGTCGCAGCCATGTTGGAAGAGGATATGGAGGTGGCCATCAAGGTGGTGGTTGTGGGCAACGGAGCTGTGGGGAAGTCGAGTATGATCCAGAGATACTGCAAAGGCATCTTCACCAAGGACTACAAAAAGACTATTGGTGTTGATTTCCTGGAACGACAAATAGTAGTAAATGATGAAGATGTGAGGCTGATGTTGTGGGACACTGCGGGTCAGGAGGAGTTTGATGCCATAACTAAGGCCTACTATCGAGGTGCGCAGGCCTGTGTGCTGGTGTTCTCAACCACTGACCGAGAGTCTTTTGaggccatcagcagctggagggAGAAGGTGGAGATGGAAGTTGGAGACATTCCTACAGTTCTGGTGCAGAACAAAATCGACCTGCTGGATGACACAGTGATTAAAAATGAGGAAGCTGAGGGTCTTGCCAAGAAACTGAAATTAAGGTTTTATCGGGCCTCTGTAAAAGAGGATCTCAACGTTAATGAAGtttttaaataccTAGCAGAAAAATATCTTCAGAGGCTCAAGCAGCAAACTGCTGATGATCCAGAGGTCGTTCACACGTCAAGCAATAAAATAGGAGTCTTCAACACTACCAGCAGCAACCACCCGAATCACAACTCCAGCGATCTCAACGGCCGTGAGGTCATCAACCTGCGACCAAACAAGCAGAGGACTAAGAAGAATAAGATCCCTTTCGGGAGCTGCACACTCCTCTAGAATGTCTGCTCTTCTTCTACTGCATGCCTCGACTGCCTTGCTGGGAGTAATGAGCTGCAGGTGTGGTCCGGGTGACATGGGACGCCATCAACACTAATCAGAGTCAGAGAAGGTGATCTTTATTTCAAACACGCTCAGGCTGCGCACTGCGGTCCGGGAGTGGACTCTGATTGCTGTGGAGGAGGAGTCTCATGTCATGTGTGATCACAGCAGCAGGCTGAATGTACGGTAACGGTCAAATTGTGGGAAAATGCACACTCTGGTGGTTGCACGTAGTAAAGCAGCCCGGGTGGAGGGGAGGTGGATTTTAAGGCCGCATTTGTTGATTTGTGAAACTCTTAAGCTGTAGTTAACCCTTTGAGATGACGAGTATTAGATTAGCCCTGCAGAGCTGTCTTAAAGCATTAAAGTCAAACATCAGAGTAGATCttactaatgtaatgtaacggaAGAAAACAGTCGTCTTCAATCTCCACTAAAAATCAAGAACTGCGGCTTTAGAACTGGATTAATATTTCAGTCAATTTTCTCTCCGTCCATTCCTTCATGCGGTATAGAGCAGGGTAACATTCACTAATgacataataattacattaaaaaaaaactaaacatagaCAATTTTTTTACTCTTACCATTTGTGCATTTGACTGTTCATCTTTTGTGCAATATGTTTGTATTGATGGAGCTATATGATTTGGGACCACAATCCTTTCATAATAATTAGTTGTTCATATCAGAGTCAGATTATCAGTTTCACTACTTTCAGCTTTTATTCTCAAAGGTATTTTTGTAAAGAGAAAACACAGTTCGACAAGTTGCTTAAAAACTTTAGCGTTAACAGAgtgccaaaaatgtttttaaactttatgtacttgtaagaaatgtaaatattgttaGGAAAACAATTTTCCACTTTTTAAAAGATCTGAAATAATATTACTGATACAGCTCTACTTCTAACACACAAGTTTATGCCCTTGACTGAAACTCTGTGGGGCTatattgaattatatatattaaacatagtTTGACTCGATTGGATTAAAAACAGCTCTATAAACGCAGTTCCGGCAGATAAAGTGCAGCTTATTTTGCACCTGGTTAAGACCAGCACTAACAGAGCACACTCCTGCTCCTCTGATTTCACGTGTGTGCGGATCACAATGTTAATATGATCatgaaaaaaagctgttttcaaGCGCCGACTCCATCTAGTAaaaccttatatatatatatataatatatatatatatatatatatatt

Function

symbol description
rab23 Predicted to enable GTPase activity. Acts upstream of or within determination of left/right symmetry. Predicted to be active in autophagosome and endosome membrane. Human ortholog(s) of this gene implicated in Carpenter syndrome. Orthologous to human RAB23 (RAB23, member RAS oncogene family).

NR:

description
ras-related protein Rab-23-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06234 RAB23; Ras-related protein Rab-23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247328.3 True 2535 mRNA 0.45 7 36361444 36381976

Neighbor

gene id symbol gene type direction distance location
LOC103034782 NA coding upstream 4874 36322340 ~ 36356570 (+)
perp perp coding upstream 207659 36146962 ~ 36153785 (+)
wdr92 wdr92 coding upstream 253215 36103079 ~ 36108229 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding upstream 261791 36076498 ~ 36099653 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding upstream 286210 36070257 ~ 36075234 (+)
LOC103029801 dst coding downstream 41136 36423112 ~ 36574340 (+)
LOC103028640 LOC108440913 coding downstream 287659 36669635 ~ 36674106 (+)
LOC103027910 NA coding downstream 309105 36691081 ~ 36700401 (+)
kif15 kif15 coding downstream 322703 36704679 ~ 36731431 (+)
tdrd9 tdrd9 coding downstream 353874 36735850 ~ 36767233 (+)
G221856 NA non-coding upstream 82692 36278507 ~ 36278752 (+)
G221852 NA non-coding upstream 151406 36209463 ~ 36210038 (+)
G221848 NA non-coding upstream 176821 36184351 ~ 36184623 (+)
G221843 NA non-coding upstream 182532 36178457 ~ 36178912 (+)
G221749 NA non-coding upstream 242139 36118967 ~ 36119305 (+)
G221872 bag2 non-coding downstream 5276 36387252 ~ 36390194 (+)
G221879 NA non-coding downstream 61330 36443306 ~ 36445372 (+)
G221891 NA non-coding downstream 238312 36620288 ~ 36623795 (+)
G221973 NA non-coding downstream 344542 36726518 ~ 36728089 (+)
G221995 NA non-coding downstream 452051 36834027 ~ 36958193 (+)
G221737 NA other upstream 304754 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 389090 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 472629 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1143066 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 1335846 35018442 ~ 35025598 (+)
G221878 NA other downstream 21172 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 594430 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 619109 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2353963 38735939 ~ 38744184 (+)
oip5 NA other downstream 2512897 38894873 ~ 38898833 (+)

Expression


Co-expression Network