LOC103034782


Basic Information

Item Value
gene id LOC103034782
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36322340 ~ 36356570 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247330.3
GGAGAACAGCCCAACAGCTCAGCCGATCCGAGCCGTTAGCAGGAGCcgttagcagcagcagtgagcGCCGCAGCGCCGATACTTATGGAGAACTTTACACCTAATTAATAAAACGTCTGTAGAACGTGTAAATCTATCCAGCGCTCGGGCACCATGTTGGAGAGGACGCGTGTCGGTGTGCTGATGTTTCTGTGCGCCGGTCTGTCCCGGGTCTCGGCTCTGGGTTTTCACCTATCTGACGTCAGTGTGATGTGTCACAATTTTGAAAATGTTGTGTCCTGGAACAACCCTAACCCACAGCTACAGCCAGAATACATTGTAACACTCAGAGGTTACAGTGGagagacagagagactcgTTTTGAAGACAACCAGTAACTTCATGGATATCAGTGAATACACTCAGAATATTGAGGAAATTTATTTTGTATCTGTGAAAACTGCCTCTGCAGACGAATCTTTTGAAGTGAACTTCACATACAAACAGGACTTTCCTGACCTtgtgaaaaaatgtACGGTGGACTTTCCCAGCATGAATACTTCAGCTTTGAGACATACCATTGAAATCTCCTTTGATCATCCTTTGTACGTCTATTATATTAAAGCGaacagtgatgatgatgatgatgatgatgatgtgtttAAATACACAGTCAGATGTAATGAGACAGCGTGCGGTGAATATGAATGCACAGACCTGTGTACAGCGGAGATTCCTGTTCCTGAAAGTCTATATGGCCAGTGCTTTAGTTTACATTTTACTGGGGAGCTCAGTTCAACACGTTTTGAAGGTTCAAAAGATGTTTGTGTTCCAGTTGAGCCTGAGAAAAAAACTGATGTACATCTTATTACTGGCTTGGTATGTGGTACAGTTGTCCTCCTGATGCTGGTGATTGTAGCTGGAATAGAGATTTACAAAAGAATGAATGGATCTGATTCTCAAAGAGCAATCTCCAAGTTTCTGCAATCTCTGGGCGTGGCGAGTTCTGAGACTCCCGTCATTGAGCCTGAGCGTCCGCACATGTCTGAGATAAACTCCATAAGTGACGCTCCTCTGCTGGTCACCCCCGATGACGACGTTTCCACTCCCATCACCCTCTCTCCTGAAGAGGTCACTCACATGCCCATCACCCTCATTTCTgagatggaggagcagagagcaagtgaggaagaggaggctTTTGACAACGGAGGCTACGACCGGCAGAAGTTTCCATTAGAGATGAGCCCTGGAGACATAGTGGATGCTTACCACCATGGAAAGAATTGAGAAGTGGCTGTAGTTCTCTAAGAGTGGTTTGAAGGTGTGCGCTGCCCAAACGAGAGGTTGAGGGTATGCGGGTCAGGCGCTGCAGTGGGCTCTCCTAACAGCCTAATTACGTCTCCATTACACAAGAGCCCTGTAATTATCACTGCTTCTGTCCTGATTGAACTGTTCACTAGAAATTGACATCACATCGTAATGCTAATGCAATAACAGAACCACATGCACTAACTTCAGTGTATTTCTGTCCCTCCTCTCCAGTTTTGTGATCACCTGTATATCCTTCCCTTATATTTTCTACCCGCTCTGCTCAACTGTAGTCATAGAGAAATGGTGACGTCCATGAGTATTACAGACAGTAGTGTTTCAGGTGTTCTTATACATACCCTGATAATCATATCCTAATCATGATTGGTAGCTTAAACGTGCTGTTACTTTATTATTGATTGTGCTGTTTGTTACACGCTGTATTTCTATAATTAGcttaca
>XM_022685047.1
GGGAGAACAGCCCAACAGCTCAGCCGATCCGAGCCGTTAGCAGGAGCcgttagcagcagcagtgagcGCCGCAGCGCCGATACTTATGGAGAACTTTACACCTAATTAATAAAACGTCTGTAGAACGTGTAAATCTATCCAGCGCTCGGGCACCATGTTGGAGAGGACGCGTGTCGGTGTGCTGATGTTTCTGTGCGCCGGTCTGTCCCGGGTCTCGGCTCTGGGTTTTCACCTATCTGACGTCAGTGTGATGTGTCACAATTTTGAAAATGTTGTGTCCTGGAACAACCCTAACCCACAGCTACAGCCAGAATACATTGTAACACTCAGAGGTTAcagagagacagagagactcgTTTTGAAGACAACCAGTAACTTCATGGATATCAGTGAATACACTCAGAATATTGAGGAAATTTATTTTGTATCTGTGAAAACTGCCTCTGCAGACGAATCTTTTGAAGTGAACTTCACATACAAACAGGACTTTCCTGACCTtgtgaaaaaatgtACGGTGGACTTTCCCAGCATGAATACTTCAGCTTTGAGACATACCATTGAAATCTCCTTTGATCATCCTTTGTACGTCTATTATATTAAAGCGaacagtgatgatgatgatgatgatgatgatgtgtttAAATACACAGTCAGATGTAATGAGACAGCGTGCGGTGAATATGAATGCACAGACCTGTGTACAGCGGAGATTCCTGTTCCTGAAAGTCTATATGGCCAGTGCTTTAGTTTACATTTTACTGGGGAGCTCAGTTCAACACGTTTTGAAGGTTCAAAAGATGTTTGTGTTCCAGTTGAGCCTGAGAAAAAAACTGATGTACATCTTATTACTGGCTTGGTATGTGGTACAGTTGTCCTCCTGATGCTGGTGATTGTAGCTGGAATAGAGATTTACAAAAGAATGAATGGATCTGATTCTCAAAGAGCAATCTCCAAGTTTCTGCAATCTCTGGGCGTGGCGAGTTCTGAGACTCCCGTCATTGAGCCTGAGCGTCCGCACATGTCTGAGATAAACTCCATAAGTGACGCTCCTCTGCTGGTCACCCCCGATGACGACGTTTCCACTCCCATCACCCTCTCTCCTGAAGAGGTCACTCACATGCCCATCACCCTCATTTCTgagatggaggagcagagagcaagtgaggaagaggaggctTTTGACAACGGAGGCTACGACCGGCAGAAGTTTCCATTAGAGATGAGCCCTGGAGACATAGTGGATGCTTACCACCATGGAAAGAATTGAGAAGTGGCTGTAGTTCTCTAAGAGTGGTTTGAAGGTGTGCGCTGCCCAAACGAGAGGTTGAGGGTATGCGGGTCAGGCGCTGCAGTGGGCTCTCCTAACAGCCTAATTACGTCTCCATTACACAAGAGCCCTGTAATTATCACTGCTTCTGTCCTGATTGAACTGTTCACTAGAAATTGACATCACATCGTAATGCTAATGCAATAACAGAACCACATGCACTAACTTCAGTGTATTTCTGTCCCTCCTCTCCAGTTTTGTGATCACCTGTATATCCTTCCCTTATATTTTCTACCCGCTCTGCTCAACTGTAGTCATAGAGAAATGGTGACGTCCATGAGTATTACAGACAGTAGTGTTTCAGGTGTTCTTATACATACCCTGATAATCATATCCTAATCATGATTGGTAGCTTAAACGTGCTGTTACTTTATTATTGATTGTGCTGTTTGTTACACGCTGTATTTCTATAATTAGcttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247330.3 True 1752 mRNA 0.45 7 36322341 36356570
XM_022685047.1 False 1750 mRNA 0.45 7 36322340 36356570

Neighbor

gene id symbol gene type direction distance location
perp perp coding upstream 168555 36146962 ~ 36153785 (+)
wdr92 wdr92 coding upstream 214111 36103079 ~ 36108229 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding upstream 222687 36076498 ~ 36099653 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding upstream 247106 36070257 ~ 36075234 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding upstream 258686 35978261 ~ 36063654 (+)
rab23 rab23,LOC107699166 coding downstream 4874 36361444 ~ 36381976 (+)
LOC103029801 dst coding downstream 66542 36423112 ~ 36574340 (+)
LOC103028640 LOC108440913 coding downstream 313065 36669635 ~ 36674106 (+)
LOC103027910 NA coding downstream 334511 36691081 ~ 36700401 (+)
kif15 kif15 coding downstream 348109 36704679 ~ 36731431 (+)
G221856 NA non-coding upstream 43588 36278507 ~ 36278752 (+)
G221852 NA non-coding upstream 112302 36209463 ~ 36210038 (+)
G221848 NA non-coding upstream 137717 36184351 ~ 36184623 (+)
G221843 NA non-coding upstream 143428 36178457 ~ 36178912 (+)
G221736 LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981 non-coding upstream 179516 36049037 ~ 36142824 (+)
G221871 NA non-coding downstream 9031 36365601 ~ 36385539 (+)
G221872 bag2 non-coding downstream 30682 36387252 ~ 36390194 (+)
G221879 NA non-coding downstream 86736 36443306 ~ 36445372 (+)
G221891 NA non-coding downstream 263718 36620288 ~ 36623795 (+)
G221973 NA non-coding downstream 369948 36726518 ~ 36728089 (+)
G221737 NA other upstream 265650 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 349986 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 433525 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1103962 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 1296742 35018442 ~ 35025598 (+)
G221878 NA other downstream 46578 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 619836 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 644515 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2379369 38735939 ~ 38744184 (+)
oip5 NA other downstream 2538303 38894873 ~ 38898833 (+)

Expression


Co-expression Network