lrrc73 (lrrc73,LOC107728077,LOC106605838,LOC107696385)


Basic Information

Item Value
gene id lrrc73
gene name lrrc73,LOC107728077,LOC106605838,LOC107696385
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30977403 ~ 30998498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247382.3
ATCTACTATCACTACTGTCAGCGTGCACCAACGGTTTCTCTGTTCGTTATATTTCAAATCAGGCTGGGCGCGCGGCTCGCCGTTTTTCACCGTTATATTAGCCGATGTGCGCTCGAGCTCCCTGTCGTGAAGGGCTCTGCATTTTGGCAGTTTTGtcgatttgttttctttataaaccccaAGTTTAGGTTCCGTTGAGGTTTAGGTCACAGTGAACCGGACCGATGACTAcgccgctgccgccgccgccgcctcGCGCGTGACTCGCACCGAGCCTTCGCCGACATGCTGCCGGGCTCGATCCAGATCACGGGCGAGGCGCTGTCTGGGGCGGAGATCCGGGATATCTGTGAGAGTCTGAAGGAGAACAGTGTGCGGCTGCTGTCCGTGCGGGGCTGCCAGCTCTCGGACCGGGACTTCGGCCGGGTGTGCCGCGGCGTGTCCGAGTCGCGCTCCCTGGCGCAGCTCAACCTGAACCTCGGCGTGGTGTCCAGCAGCAGCCGCGCCAAGCAGCTCGCGGACGCGCTGGAGGCCAACAGATCCATTCAGACCCTGTTTCTGCATGGAAGCCCTCTTTTAGATGCAGGGTTGGTCACCCTGAACACAGCGCTGTCGACTCACCCCTCACTGGTGTCCTTGGATCTGGGGGACTGTATGCTCGGAGATGAAGCAGTTCAGCTGATCTGTGGCATGTTGCCTCCTGATGGAGCCAAATCTGGTCTTAGGGAGTTGACACTAAGTGCAAACCCTGCAATTACCACCAAGGGCTGGGCTCGACTGGCCATTGCTGTAGCCCATAGCTCCCAGCTACGTGTCCTCAATCTGGACTACAATCCCTTAGGGGACCAGATTGCAGGAATGTTGGCTGTTGCTGTAGCTTCCAGCCGGACTCTTGAAGTTCTAGACTTGGAGGGGACAGGGCTCACAAATCAATCAGCACAGGTCTTCCTGGACATGGTGGAGAATTACCCCACATGCTTGCGTGTGCTGGTGCTGGCTGAGAACGCCATCAGCCccgagctgcagcagcagatatcCGACCTGCTCTCTGAGGGTGAGGATGATGACGAGAAGGACGCTGAAGCCCGTGGAAGATCTGTAGCCCCCCGAGAGAAGCCCGCTTGGCTCCCTCACAGCAactccaactcccagatgGTCCTGATGGCATCAGGACTGGGTGAGAGCTTTTTGGCAGAGACAGAGATGTGATAACTGGAGCTGCCTTTGGTTTTAGGTTTGCACCGCGCACCGCTACCGCCAGACCACCTGTTAGCGTGCAACCACTCACTCTGCATGACCTGTAGCACTTAGCGGTAGACCGTTTGAAGCTGGCACAAAATCAAACCTCGATCACCAAGTGACTTATAATACTCAAtagtgaattatttattttccagatGTACAGAAGTACTATTTATAAGTAACTATTTAAGCAACTACAGTATCCACAGTCTTCATTTGATCAACCAAGTAGGATTGTTGTGATGGCCTgatgtataaataaatctattaacatcttttttaaatgctttgtcATGTCCAGAACTGTGTCAGTTTCATCCTGAACATGATTAAGTTGAAGATAAAGGTTAAAATTTGAGAGCGCCTTTTAATCGCATGGATTTTTCTGAAGGAATGTACGTGGCAGGTGTCTGCCCTTATTGCAATGAGAGACTCTCAGCTCATTTGACATTCTGTAGTGTACAAGAATTATATTTTGGCAAGCAAATCGACCTTTAATATGGtcaaatgaaaatgtaattaattttggCCATGCTCTTTTTGGGTATTTCCCCATTCCCATTGTGATGCTGGGTGGCACAGGTATCTCCCAAATGATTTATCAGAGTTGGGgatgctgtgctttcctctgagtgcgttACCTGCCTCGTGGTGCTGCATTGTTGGCAgtgtaaaaagaggtggtggtggtAACGTTCCAtttatcagaggaggcatgtgcttgtgcTCCAAGTGATAGGGAGTCCCAGTGATATGATGGGTTAATCGACCAAgctaaattgaggagaaaatttGATAAAAAACACAAGGGGGGGAGTGGGAGCAACCTTACCCATCAATTGTgtgaatcagttaatgagtttgtatATTTGGATGGTTTTCCTCTTAGTTTGGTTTAACCTCCTCCTTTTGTGGATTTTCACACCTACAAAATCATCAAAAAAGGGGAATAAAAATATGAAGTGAGAAAAGACCCTAAGACTCCTGGCCAATGGGTGAGTGATGACTGATCCGCTACACACCATCAGGAAACAAACCGGCAATCCCCCAGTGTacaatttttcatttattgCCTTTTTAAAATGACTGGCATTTTGTCTAAGCATTTGTTACTTGTTTCATTTCATTggatttttttgtcatgttaATCATTTGACTCATTTTAAGCATTATgtctttatgtaattttactaaattattttattattaataaataataaagctgtAGATTAAATTTACTTGCCAAgatattttttcagtgcagtgctgatgaGTTCAGATGAGGTCAGTTCTTCTCAAATGCTGTTCCCATTTTCTCTGAGATGTCAGATCATGCCAAGTATATGTCTACACACCGACACCATACTGGTGTTCTTGAAATCGTCTTAAAAAAGGATGAATTTCTCCTGATAATGGTGTCATGTTTCAGTGCTGTTATGCTGCTAAAACAGCTCCTGTGCAAAGCTGATTATGCTGTTTATACCATTTCAGGACAACTGTGATCCGATTAAAGCCCTTTTATTCCAA
>XM_022684986.1
CGATAGTGGTGAATTAATGTGTCCTTATTAAAACCACACCAGCGAACAGCGCTATCTCAGGTCTGCACACACCGAGTCTCTAAACCGAGCGTGACGAGCCGCCTCCGACACTGACAGGCGGACAGAATCAGAAATACTGAACCTGTCCGCGGGTTTCAGTCCGTACTAACCCGCCTATACCAGCCCCAGCACTGCCTGTACTAAACCCGAGCCGCCAGCCTCTGTTGAACAGCtccagagaggaggagaggcgaGCAATGATGTCAGCGCAACTTTGAGAACACGCTCTGTCTGCATGGAAGCCCTCTTTTAGATGCAGGGTTGGTCACCCTGAACACAGCGCTGTCGACTCACCCCTCACTGGTGTCCTTGGATCTGGGGGACTGTATGCTCGGAGATGAAGCAGTTCAGCTGATCTGTGGCATGTTGCCTCCTGATGGAGCCAAATCTGGTCTTAGGGAGTTGACACTAAGTGCAAACCCTGCAATTACCACCAAGGGCTGGGCTCGACTGGCCATTGCTGTAGCCCATAGCTCCCAGCTACGTGTCCTCAATCTGGACTACAATCCCTTAGGGGACCAGATTGCAGGAATGTTGGCTGTTGCTGTAGCTTCCAGCCGGACTCTTGAAGTTCTAGACTTGGAGGGGACAGGGCTCACAAATCAATCAGCACAGGTCTTCCTGGACATGGTGGAGAATTACCCCACATGCTTGCGTGTGCTGGTGCTGGCTGAGAACGCCATCAGCCccgagctgcagcagcagatatcCGACCTGCTCTCTGAGGGTGAGGATGATGACGAGAAGGACGCTGAAGCCCGTGGAAGATCTGTAGCCCCCCGAGAGAAGCCCGCTTGGCTCCCTCACAGCAactccaactcccagatgGTCCTGATGGCATCAGGACTGGGTGAGAGCTTTTTGGCAGAGACAGAGATGTGATAACTGGAGCTGCCTTTGGTTTTAGGTTTGCACCGCGCACCGCTACCGCCAGACCACCTGTTAGCGTGCAACCACTCACTCTGCATGACCTGTAGCACTTAGCGGTAGACCGTTTGAAGCTGGCACAAAATCAAACCTCGATCACCAAGTGACTTATAATACTCAAtagtgaattatttattttccagatGTACAGAAGTACTATTTATAAGTAACTATTTAAGCAACTACAGTATCCACAGTCTTCATTTGATCAACCAAGTAGGATTGTTGTGATGGCCTgatgtataaataaatctattaacatcttttttaaatgctttgtcATGTCCAGAACTGTGTCAGTTTCATCCTGAACATGATTAAGTTGAAGATAAAGGTTAAAATTTGAGAGCGCCTTTTAATCGCATGGATTTTTCTGAAGGAATGTACGTGGCAGGTGTCTGCCCTTATTGCAATGAGAGACTCTCAGCTCATTTGACATTCTGTAGTGTACAAGAATTATATTTTGGCAAGCAAATCGACCTTTAATATGGtcaaatgaaaatgtaattaattttggCCATGCTCTTTTTGGGTATTTCCCCATTCCCATTGTGATGCTGGGTGGCACAGGTATCTCCCAAATGATTTATCAGAGTTGGGgatgctgtgctttcctctgagtgcgttACCTGCCTCGTGGTGCTGCATTGTTGGCAgtgtaaaaagaggtggtggtggtAACGTTCCAtttatcagaggaggcatgtgcttgtgcTCCAAGTGATAGGGAGTCCCAGTGATATGATGGGTTAATCGACCAAgctaaattgaggagaaaatttGATAAAAAACACAAGGGGGGGAGTGGGAGCAACCTTACCCATCAATTGTgtgaatcagttaatgagtttgtatATTTGGATGGTTTTCCTCTTAGTTTGGTTTAACCTCCTCCTTTTGTGGATTTTCACACCTACAAAATCATCAAAAAAGGGGAATAAAAATATGAAGTGAGAAAAGACCCTAAGACTCCTGGCCAATGGGTGAGTGATGACTGATCCGCTACACACCATCAGGAAACAAACCGGCAATCCCCCAGTGTacaatttttcatttattgCCTTTTTAAAATGACTGGCATTTTGTCTAAGCATTTGTTACTTGTTTCATTTCATTggatttttttgtcatgttaATCATTTGACTCATTTTAAGCATTATgtctttatgtaattttactaaattattttattattaataaataataaagctgtAGATTAAATTTACTTGCCAAgatattttttcagtgcagtgctgatgaGTTCAGATGAGGTCAGTTCTTCTCAAATGCTGTTCCCATTTTCTCTGAGATGTCAGATCATGCCAAGTATATGTCTACACACCGACACCATACTGGTGTTCTTGAAATCGTCTTAAAAAAGGATGAATTTCTCCTGATAATGGTGTCATGTTTCAGTGCTGTTATGCTGCTAAAACAGCTCCTGTGCAAAGCTGATTATGCTGTTTATACCATTTCAGGACAACTGTGATCCGATTAAAGCCCTTTTATTCCAA

Function

symbol description
lrrc73 Orthologous to human LRRC73 (leucine rich repeat containing 73).

NR:

description
leucine-rich repeat-containing protein 73

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247382.3 True 2769 mRNA 0.47 6 30980808 30998498
XM_022684986.1 False 2502 mRNA 0.45 6 30977403 30998498

Neighbor

gene id symbol gene type direction distance location
yipf3 yipf3,LOC107696384,LOC107728076 coding upstream 6753 30961520 ~ 30970650 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding upstream 34617 30924412 ~ 30942786 (+)
LOC103026410 qki,LOC107739475,LOC107696379,LOC107559772,LOC106605787 coding upstream 126018 30645356 ~ 30851385 (+)
LOC103027087 LOC103027087,LOC108411988 coding upstream 509437 30447453 ~ 30467966 (+)
LOC103028857 LOC103028857,LOC108422795,LOC108262942,LOC107590000,LOC107728796,LOC107578331,LOC107696376,LOC107586467 coding upstream 823430 30149433 ~ 30153973 (+)
dlk2 dlk2 coding downstream 245662 31244160 ~ 31282824 (+)
mea1 mea1 coding downstream 295683 31294181 ~ 31298256 (+)
trnak-cuu_12 NA coding downstream 394236 31392734 ~ 31392806 (+)
trnaa-agc_18 NA coding downstream 405209 31403707 ~ 31403779 (+)
trnag-gcc_3 NA coding downstream 416402 31414900 ~ 31414970 (+)
G220605 NA non-coding upstream 76988 30896128 ~ 30900415 (+)
LOC111196026 NA non-coding upstream 115820 30851722 ~ 30861583 (+)
G220407 NA non-coding upstream 789396 30186222 ~ 30188007 (+)
G220392 NA non-coding upstream 817611 30102451 ~ 30159792 (+)
G220388 NA non-coding upstream 893786 30083149 ~ 30083617 (+)
G220624 NA non-coding downstream 123751 31122249 ~ 31176810 (+)
G220629 NA non-coding downstream 156632 31155130 ~ 31161593 (+)
G220640 NA non-coding downstream 173677 31172175 ~ 31175036 (+)
G220692 ppp2r5d,LOC106605890 non-coding downstream 308271 31306769 ~ 31308879 (+)
G220694 ppp2r5d non-coding downstream 326346 31324844 ~ 31330182 (+)
G220610 NA other upstream 25462 30949012 ~ 30951941 (+)
G220336 NA other upstream 1183907 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1337002 29636061 ~ 29640401 (+)
G220194 NA other upstream 1835385 29141367 ~ 29142018 (+)
G220074 NA other upstream 2256742 28719256 ~ 28720661 (+)
G220800 NA other downstream 738399 31736897 ~ 31738196 (+)
map10 NA other downstream 1286079 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1504276 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1614976 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 2215130 33213628 ~ 33232791 (+)

Expression


Co-expression Network