dcdc2b (dcdc2b)


Basic Information

Item Value
gene id dcdc2b
gene name dcdc2b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38941253 ~ 38973109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247504.2
aaaatattaagataagcttTTGGAtcagagttgaatgtagggttatattcaatagaaaatcaattactttcacctttcagttcatttgcatttaatagagatgtagttgaatgtcaatttaatgtcagttgagcatcaaagaggcaaTAGACCATCGGGGTAAAGTGTAATTTACCTAATTTACTTAACTGAGGAGCCCTTGTTGAGGGAAACTCAGTGTGTTCCAgtaggaaaacaataaaatcagCAGGATGGTGGTACTTCAAGACCAGTATTGAGAATCAATGATCTAAAGCAAAGCATACCAAATATgtatctgttaaacatggtggtggggggtTTGAAATGTGCAGGCACACTTTCCATCTCCCAAAGTTCAGTTTTAGAAATAGGAGCATTTTGTGCTTCTCAGCACCCAGTGATATTGAGGCCTGGACTCTGGGGTGGTCAGTTGGTGAGTCcattgttagatttttttttttttttttgtatattttgcctcttttgtctattttctttgtttattgtcCCATTAAATAAGTTTGTgtttgtagtgatgaactgttGGTATCTGATGATATTGTATTATTGCtgttataataaatgtaaaagtgaGGAAGTTGAGGTTAttgattgtgttttgtttttgttctactTTATTGATACAAGTTGTATTTTGAGGAGAACGAGATGAGAGGTGACAAAATCATCAGATTTATGGCTTCTGGACGTATtgtactctctctcttgttctctctgtgtatgtgtatgtctctctcccctcttccCTCTagccctcctcctcctgctctttTGTTGTTGCCACCGTTCGCTGGCAGTGCTGCCATAGCAACCAGGAAACACTTCAGTGTGTGCGTGAGAGACACTAAATGTGCGTGAGCGGCTGTGGAGCGCTGTACCGCACAAGACGGCTGGATCAGAAACCAGATCTAATTCCTCCAAAGCGCACTCAGCATCACCACCTGCTTTCCTGAAACACACCtgagtacagtgtgtgttcGGATATTTGGATGCTGTAATCTCCTaagGAACATCAGCTCTGCATGGTTGTAGGAATGGCCTCCACTGGGGTCAGCTCTCTCCTGCCCCCTGTGAAAAGTGTGATGGTGTACAGGAATGGAGATCCTTTCTTTACAGGGAGGAAGTTCATTGTAAACCAGAGGCAGATCTCCACTATGGAAGCATTCCTAAACGATGTGACTGTCAGCATAGGAGCTCCACTGGCCATCCGGACCCTGTACACCCCGCGGCACGGCCACCGAGTGCCTGACCTGGACCACCTTCAGCAGGGGGCGCAGTACGTGGCTGCAGGCTTTGAGAGGTTCAAGAAGATTGAttaTTTTAGTGTTGGGCTGAAGAGAGCGCCAGTGAACAGGCCTGGAGAGGTTAAAGTGCTCAGCAGACCAAATGTATCTGCAAAGTGGAGGAAGGTCATCACCCTGCCCTGCATTATAAaTGTCTTTAGGAATGGTGACATCCTCAGCTCCGCCATGCGCTTCATTATCCCTCGTAACATGCTGAAAAACCTGGAACAGATCCTCAGCCTCATCTCGGAGAAGGCCATGCTGCGCACTGGAGCTGTTCGCAGGCTGTGCACGCTGGATGGCGTCACGGTGGCATCAGCAGAGGAGCTGGAGAGCGGGCAGTGTTACGTTGCCGTGGGAACGGAGCGGTTCAAGAAGCTTCCCTAtgtggagctgctgctgaacaAAGCGGCAGGAGGCAGTGCGGACAGGCATTATGTAGGAGAGCGGGGGCTACACAGAAGATCTGAGATCCGGAAGGCCTTTCCTCAGGACAGCCACAGTGACTCCGCCCTGCTTGATTCACCCGagagggaTGACCGGCGGGTGAAGTCAACAGGTGACGAGGCAGCAGGTACGAGCCCCTCCCAGCCGCACCACAGGAGAGCAGGGGGCAGCAAAAGGGAGGAGAACTCTGTATTTTACGCCAAACCAGTCAGAGTCCGCAAAGACAGACCCACAGCCAGAGCAACAGCAGGCCAGACAAGTGTGTTTAAGGGTGTGGGCAGGAGGAGAGAGGAGGTGCGAGGAGCAGAGGAAGTGGTAGAAGACAAGAACACAGCTGTAGAGCTCCCTGTGGATCAGagaGCTGCTGAAATTGTTGAGGATGAGGAATTTAATAAGAGCCAACAAGAAACAAATCACATACATCAGacaCAATCAAACAAAACACTCATGACATCACCCAACCGGTCATCAAATGACAGAGAGTCATCACAAAGAGGAGTTCTGCCTCCAACACACAAACAAGACGATGACACGTTCACAGAAGAATTTGAGCATGAAGGAGGCCAGGGTGaaactGGTGGAAGTTTTCATGAAGCAGAGACAGTGAGGTCTGCACAGCACAGCCCCCTGGACACCCACGCTGAAGAAACCCAGCTTTCTTCATCCGAACAAACAGAGTGACCTGCTCAGATAGAGTCTATCCAATCACACACCCTACATATAACCTACAGTTATTCCTGCACTGTCCATCAAAAGTATAGggtcacattatgtcaaaatgaTAAGTAGTAGTGGCCCAATTTCAAGgtttaagtgtgttttaaaagcaACTAATAAACAGGtttaatattactttaa

Function

symbol description
dcdc2b Acts upstream of or within pronephros development; sensory organ development; and sensory perception of sound. Predicted to be active in microtubule and microtubule organizing center. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; autosomal recessive nonsyndromic deafness 66; dyslexia; nephronophthisis 19; and sclerosing cholangitis. Orthologous to several human genes including DCDC2B (doublecortin domain containing 2B).

NR:

description
doublecortin domain-containing protein 2-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247504.2 True 2630 mRNA 0.47 14 38941253 38973109

Neighbor

gene id symbol gene type direction distance location
iqcc NA coding upstream 988 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 10494 38917631 ~ 38930759 (+)
tmem39b tmem39b,LOC107675583 coding upstream 25282 38907566 ~ 38915971 (+)
ndufaf1 ndufaf1 coding upstream 52714 38885274 ~ 38888539 (+)
golga5 golga5 coding upstream 69109 38860613 ~ 38872144 (+)
LOC103040939 LOC108414593 coding downstream 79387 39052496 ~ 39152430 (+)
LOC103047800 NA coding downstream 362172 39335281 ~ 39371359 (+)
LOC111196043 NA coding downstream 400873 39373982 ~ 39376638 (+)
gphb5 NA coding downstream 604663 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 1112976 40086085 ~ 40110675 (+)
G222454 NA non-coding upstream 47922 38890734 ~ 38893331 (+)
G222449 NA non-coding upstream 82117 38858772 ~ 38859136 (+)
G222447 NA non-coding upstream 93959 38846577 ~ 38847294 (+)
G222442 NA non-coding upstream 116174 38822740 ~ 38825079 (+)
G222436 NA non-coding upstream 142834 38798089 ~ 38798419 (+)
G222465 NA non-coding downstream 5140 38978249 ~ 39058910 (+)
G222589 NA non-coding downstream 188378 39161487 ~ 39161688 (+)
G222595 NA non-coding downstream 201073 39174182 ~ 39174576 (+)
G222603 NA non-coding downstream 298153 39271262 ~ 39271357 (+)
G222601 NA non-coding downstream 301429 39274538 ~ 39274832 (+)
oip5 NA other upstream 42420 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 197069 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 1921951 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 1949769 36976406 ~ 36991484 (+)
G221878 NA other upstream 2532212 36403148 ~ 36409041 (+)
LOC103047486 LOC108443507 other downstream 224598 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 705393 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 1357964 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 1376698 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 2092549 41065658 ~ 41073316 (+)

Expression


Co-expression Network