LOC103043501 (pqlc3,LOC107706924,LOC107675554,LOC107681540,LOC107757120)


Basic Information

Item Value
gene id LOC103043501
gene name pqlc3,LOC107706924,LOC107675554,LOC107681540,LOC107757120
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38436569 ~ 38444698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247526.3
GCGGGGCATGTCGGAATACAGGCGGGGAAAGAAGTGCCTTTCTGTGCCAAACAGTTTCATCTTCCAGCTGCCGAGTGCTCCTCTCccgtcagtgtgtgtgtttacagtgagtgagtgtgtgtaagagtgtgtgagtgtagctGTGTTAATGATGGACTACAGCCTCCCGCTGCACATCGCGAACTTCAGCACGCTGTTCGTGTGCTCGGTGCTCAAGTTCCCGCAGATGTGGGTTCTCTTCCGCGCCAAATCCGCGGCGGGGGTCAGTCTGAACAGTCTGCTGCTGGAGCTCGTGGGGTTCATAGTGTTCGTCTCCTACCAGATGTACTACAACTACCCTCCTCCTACATACCTGGAATACCCCATCCTCATCACACAAGACGTCATCCTGCTGCTTCTGATCCTGCACTACAATGGAAACATGAAGCATGGCCTTATCTATGCAGCAGTGTTTGTAGGTGGCTGGAAGCTACTCACCCTCGAGAAGTGGATCATTGACTTGGCCATGAGTCTGTGTACGTTTATCAGTGCGGGCAGTAAACTGGCACAGCTGCAGTGTTTGTGGAGATCTAAGAACTCAGGACAGGTCAGCACTCTCACCTGGGGTTTGGCCTCCTACACATGCATGGCAAGAATCTTCACTACTCTGGTGACAACTGGAGACACTCAGGTTCTCATCCGCTTCGTTGCCATGACGATCCTGAACTTGTGGGTGACGTTCACTGTGATCTACTACAAACCCAGCGCCAAGAAACAGGACTGAGATGCAGACGTTTGTGGGACTATTTTAGCTTCATTACTTCACCTTCATATTTGGACCTTCTTGTACTTTTACTGACCAAAATGCTTCACACTGCTCCTACACCTCCAGTGTAGGGTGATTGAACTCACCCAAAATTACCCAAAGACCACCTGAATCAGGTGTGATTTTTACCCTTCACCTCGATTGTAACACAAGGTGGCAGTATATAAGAtcagcctatttttttttatatatattttttttttacctacattCATTGGCCATTTTACCAAAAACACAAGATTTTCAATTTAGGTACTTTTTGTAGGTGTAAAGTTACAAACTGTAGTTTATTTATTGCTCTTCATTGGAAAGAGAACACAGCttttttggccactttattagaaacatttgcTTTAAAATTGCTTTGATTTGTAGATACACTCAGACTGTGAGTGCTtattcataaataatatatcatGTTGTGGGTGGTGAAGGTGGGA

Function

symbol description
pqlc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; lower jaw molar; olfactory epithelium; and upper jaw molar. Orthologous to human SLC66A3 (solute carrier family 66 member 3).

NR:

description
PQ-loop repeat-containing protein 3

GO: NA

KEGG:

id description
K23680 PQLC3, SLC66A3; solute carrier family 66, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247526.3 True 1245 mRNA 0.46 7 38436569 38444698

Neighbor

gene id symbol gene type direction distance location
sobp sobp coding upstream 11500 38359610 ~ 38425069 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding upstream 171056 38257503 ~ 38265513 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding upstream 361454 38072267 ~ 38075115 (+)
LOC111195988 NA coding upstream 567296 37866795 ~ 37869273 (+)
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding upstream 781068 37646712 ~ 37655501 (+)
arg2 arg2,LOC107675544 coding downstream 203887 38648585 ~ 38658342 (+)
LOC103041043 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107588583,LOC107705384,LOC105896832 coding downstream 234931 38679629 ~ 38688615 (+)
golga5 golga5 coding downstream 415915 38860613 ~ 38872144 (+)
ndufaf1 ndufaf1 coding downstream 440576 38885274 ~ 38888539 (+)
tmem39b tmem39b,LOC107675583 coding downstream 462868 38907566 ~ 38915971 (+)
G222355 NA non-coding upstream 2182 38417113 ~ 38434387 (+)
G222294 NA non-coding upstream 237607 38197603 ~ 38198962 (+)
G222284 NA non-coding upstream 284430 38151599 ~ 38152139 (+)
G222283 NA non-coding upstream 290832 38145430 ~ 38145737 (+)
G222280 NA non-coding upstream 348969 38087304 ~ 38087600 (+)
G222362 NA non-coding downstream 3504 38448202 ~ 38448460 (+)
G222373 NA non-coding downstream 75238 38519936 ~ 38520856 (+)
G222411 NA non-coding downstream 217646 38662344 ~ 38663701 (+)
G222412 vti1b non-coding downstream 222744 38667442 ~ 38675020 (+)
G222413 NA non-coding downstream 231149 38675847 ~ 38678511 (+)
slc38a6 NA other upstream 1417267 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 1445085 36976406 ~ 36991484 (+)
G221878 NA other upstream 2027528 36403148 ~ 36409041 (+)
G221737 NA other upstream 2379879 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 2464215 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 291241 38735939 ~ 38744184 (+)
oip5 NA other downstream 450175 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 753009 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 1233804 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 1886375 40331073 ~ 40339652 (+)

Expression


Co-expression Network