LOC103027910


Basic Information

Item Value
gene id LOC103027910
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36691081 ~ 36700401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247561.3
AAACGGGTATTCTGTTAAACCAGTGCAGCGGCTCAGTTAAGATACTCACAGCGGAGAGGGAGCCGCAGCCCGTCTCTTCAGGATAAACACGTTTTAATCTTTatttctgcttcttctgctgctgacTGTCTGTACGGAGACATtaTGAGTTCAGTGGTGGTGAATGATGAGAATCAGGGAGTTTGCCCTGTTAGGAAGCACATTGCACCTGAAACTTCTGCTGATATTTTTGCTTTGGATCAGCCCACCGGCAGGCCTTCCATACTGAGACAATCTCAGGCTGAAAACCTCAACAAAAACGTGCCCAAAGGAGTGAAGGTTTGTTTCCAAACTCCACGCAGAGACCCGGTGACTAAGAAAATTATGTCTCCTAGCCGTGTTGGCAAGATGGCCTCTTTGGATGATTGCACAGCTCTCCTAGAGTCTCTCTCGCTGACTTCTACTGAGACACCTGCTCTGCAACATGCTCCTACTGCACCAACTGATGTCCCAAGCACAACTGAAGCTCCCTACCCTGATGATGAAATGCCTATTCAAAGCAAAGGAGGCTACACAATTGATTTTGATAATCTAGAGTGGATGAATCCTTTTCAGGGCTCAGCTAAAATGATCCTGTCACCATGCAAACCTGCTCTATCAGAGACTATGGTTCCACCTGTTCCAGAACAACCGGATGAGGTTTCTATTGCCTCATCTGCTTTTGAAGAGGTGGAGAAAGTTGAAGAAAAGCAAGCTCTCATAGATATGGCCTTGGATGAGACTGTTCTTCTGAACCAGTCAGTAGAAAATGCTCTTGCAGATATATCTTCAGATATACCCTCAACAGACACTACGGTGATTATTGGCCAGAGATGTTTAGAAACACCAGTCTTGGATCAAAGCAGTAATGATGTTGAGGATCTGAAGGTTCCTGAACCAGTTTCTGTCATAGAGAGTGTTCCTGTTGGAGAGGAACCTTCAGAGGCTGAGAAATCTCCCTTGCCACCGAAAGTTGCTTATAGCTTTGATTTTGATAATCTTGATTCAGTCAATCCTTTTCAGACTGGTGGTTCAAAGCTTCAGAACTCCCCTCCTCTTGGCAGAAAAGCACCAGTCAGCAATTCTCTGCCTTCAGAAATGGTGGAACCTAAGAAAGAACTTAGTGAGGCTGTACTAGAGAATACTGAGGCTGTACCAGAAAATATCAAGGCTGTTCCAGAGATGCCTCCCCAACCAGAGGTGAAGCCTGCAGTTATCGAAAGCACTCCAGCTTCTGAGTTGCCTCCTAAAGCTGGCTCATTGTTACTGGAGTTTAATGTGGACAACGTTTCCGAGATGCCTAGCCAACCAGAGGTGAAGCCAGaggttattacagaaagcactTTAACATCTGAATTGCCTCCTAAAGCCAGTGCGGTGTTGCTCGAGTTTAATGTGGGCAATGTTTCAGAGATGCCTCCCCAACCAGAGCTAAAGCCTGTGGCCCCTGTACCATCTGCAGTTACAACCGAAAGCACTACACCATCCGAATTGCCTCCTAAAGACAACAAAATGTTATTGGAGTTTAACTTTGATGACGGTGCTGAAGTCAAACGCAAGCCGCCCCCCAAGCGCCTGGGCATGAAGAGGCCACCAGGTGCCAAACCTGCCCCTAAAAAAACTTCCTCAGTTCCAGATGAGAAAAAATCCCCAGAACCCAAACCGCAGTTTCTTGACACAACTGTTGAGATTGCACCTGTTGATATCCCTGTGGCGAAAGGCTCTTACAACTTTGACTTTGACAAATTTGATGACCCTAACTTCAATCCATTTGGTGCGAAAGCTTCGATGGCTAACTCTCCTCCTCGTGGTGATCAGAGCATTCCAGTGATGAAAGAGGAAGCACAAGCTGCACCATTACAGACTACGATACAATTACAGTCAGACAACCAACAAGGGGAAAAGCATGATGTGTCAAAAAGTTCTCCATGCAACAGTGTTGAAGAAAGTGCAGATGTTGAGCTGTCTTTGACTAAGACTCagACAAACATTGAGACAGAGTTGCCCATTGTCCCACAGAGCAAGGAACCCTGCATCCCAGTCACGCCAGAGCCTGTAGTGAGAAAGCAGACTCCTGAGCCCTGCCCACTAAAGCAGAGTGCGGAGTTTGGTTCTGCTGCAGCTGAAGAGGAGTTTGTGCCCGGCTCTATGTTCCTGCCTAATGATTTTGATGAACAGATCGATTATCTGGAACAGTTTGGATCGAGCACTTTTAAGGAGTCTGCCCTGCGTAAGCAGTCACTGTATTTGAAGTTTGACCCTCTGGTGAAGGAAAGTCCTAAGAAAACAGCATCAGCAGACAGCACAAATTCTGGATTCTGCCTTCCACGGCCTTCCCTCGCCATCCGGATGATGGAAGCTGCAAAATCTGAGGTGAAGCAGAAATCTCAGCAGGAAAGCCCAAAGCTACTGGAGGATTTCCCACCACTTGTGGTTGAAGCCCCTGTGGTTCAGGATCCCACTGTGCTGGACCTGCTGGTGCCTACCCTCAAACAGCCACAAAAGAGTGAGGGTGTGATTGTGGATGTGCTGAAGTATAGCCAGAAAGATATGGATGCTGCCATGGAAAGGGCACGTAAACAGGCTGAAGAGAAGGAGGAAGAACTTAAGGCTCAGATTGCAAAAATGACTATGGATAACGAACACATGGTATTGATTGTGTCAGAGTTTGAGACCATTATTGCTCAGATCACAGCGGAACACAAGCAGAAGGAAGAGCTGGTGCAGGCAGAGCTGAGTAAAgtctttcaggagaaacaacAGCTGGCTAAAGACTTGAACGATATGGAGCGCTCCTTCTCAGATGTAGTCAAGCGCCTGGACCGACGCAAGGAGGTCATCGACGGCTTTAAGAAGAATGAAGAGACTCTGAAACAGTGTGCACAGAGCTATCTGGCTAGGCTGCAGAAGGAGGAGCAGCGCTACCAAATGCTGAAAACCCATGCAGAGGAAAAGATTGAGCAGGCAAATAAAGAGATTGCAGATGTGCGTTCCAAACTTGGCACAGAGATTTCTGCACTTCAGGTTCAGCTGAGGCGGGAGCAGCTCAAAGTGCAATCACTAGAGAAGAACCTGGAGCAAAAGGTAAAGGAGGTGGAAGATGTCACCAAGCTGTGTGATGAGCTGATTATGAAAGTGCAGAAGCACtaaaacttttatttctgtttgtctgtctttgtatgtctcttgttcttgttcttacctaaatgaataaaaaaaaaaattacaatgttCACAC
>XM_007247562.3
AAACGGGTATTCTGTTAAACCAGTGCAGCGGCTCAGTTAAGATACTCACAGCGGAGAGGGAGCCGCAGCCCGTCTCTTCAGGATAAACACGTTTTAATCTTTatttctgcttcttctgctgctgacTGTCTGTACGGAGACATagTTTCCTGGGTTCTGGAGAGAGACATGGCCATAAATGtaTGAGTTCAGTGGTGGTGAATGATGAGAATCAGGGAGTTTGCCCTGTTAGGAAGCACATTGCACCTGAAACTTCTGCTGATATTTTTGCTTTGGATCAGCCCACCGGCAGGCCTTCCATACTGAGACAATCTCAGGCTGAAAACCTCAACAAAAACGTGCCCAAAGGAGTGAAGGTTTGTTTCCAAACTCCACGCAGAGACCCGGTGACTAAGAAAATTATGTCTCCTAGCCGTGTTGGCAAGATGGCCTCTTTGGATGATTGCACAGCTCTCCTAGAGTCTCTCTCGCTGACTTCTACTGAGACACCTGCTCTGCAACATGCTCCTACTGCACCAACTGATGTCCCAAGCACAACTGAAGCTCCCTACCCTGATGATGAAATGCCTATTCAAAGCAAAGGAGGCTACACAATTGATTTTGATAATCTAGAGTGGATGAATCCTTTTCAGGGCTCAGCTAAAATGATCCTGTCACCATGCAAACCTGCTCTATCAGAGACTATGGTTCCACCTGTTCCAGAACAACCGGATGAGGTTTCTATTGCCTCATCTGCTTTTGAAGAGGTGGAGAAAGTTGAAGAAAAGCAAGCTCTCATAGATATGGCCTTGGATGAGACTGTTCTTCTGAACCAGTCAGTAGAAAATGCTCTTGCAGATATATCTTCAGATATACCCTCAACAGACACTACGGTGATTATTGGCCAGAGATGTTTAGAAACACCAGTCTTGGATCAAAGCAGTAATGATGTTGAGGATCTGAAGGTTCCTGAACCAGTTTCTGTCATAGAGAGTGTTCCTGTTGGAGAGGAACCTTCAGAGGCTGAGAAATCTCCCTTGCCACCGAAAGTTGCTTATAGCTTTGATTTTGATAATCTTGATTCAGTCAATCCTTTTCAGACTGGTGGTTCAAAGCTTCAGAACTCCCCTCCTCTTGGCAGAAAAGCACCAGTCAGCAATTCTCTGCCTTCAGAAATGGTGGAACCTAAGAAAGAACTTAGTGAGGCTGTACTAGAGAATACTGAGGCTGTACCAGAAAATATCAAGGCTGTTCCAGAGATGCCTCCCCAACCAGAGGTGAAGCCTGCAGTTATCGAAAGCACTCCAGCTTCTGAGTTGCCTCCTAAAGCTGGCTCATTGTTACTGGAGTTTAATGTGGACAACGTTTCCGAGATGCCTAGCCAACCAGAGGTGAAGCCAGaggttattacagaaagcactTTAACATCTGAATTGCCTCCTAAAGCCAGTGCGGTGTTGCTCGAGTTTAATGTGGGCAATGTTTCAGAGATGCCTCCCCAACCAGAGCTAAAGCCTGTGGCCCCTGTACCATCTGCAGTTACAACCGAAAGCACTACACCATCCGAATTGCCTCCTAAAGACAACAAAATGTTATTGGAGTTTAACTTTGATGACGGTGCTGAAGTCAAACGCAAGCCGCCCCCCAAGCGCCTGGGCATGAAGAGGCCACCAGGTGCCAAACCTGCCCCTAAAAAAACTTCCTCAGTTCCAGATGAGAAAAAATCCCCAGAACCCAAACCGCAGTTTCTTGACACAACTGTTGAGATTGCACCTGTTGATATCCCTGTGGCGAAAGGCTCTTACAACTTTGACTTTGACAAATTTGATGACCCTAACTTCAATCCATTTGGTGCGAAAGCTTCGATGGCTAACTCTCCTCCTCGTGGTGATCAGAGCATTCCAGTGATGAAAGAGGAAGCACAAGCTGCACCATTACAGACTACGATACAATTACAGTCAGACAACCAACAAGGGGAAAAGCATGATGTGTCAAAAAGTTCTCCATGCAACAGTGTTGAAGAAAGTGCAGATGTTGAGCTGTCTTTGACTAAGACTCagACAAACATTGAGACAGAGTTGCCCATTGTCCCACAGAGCAAGGAACCCTGCATCCCAGTCACGCCAGAGCCTGTAGTGAGAAAGCAGACTCCTGAGCCCTGCCCACTAAAGCAGAGTGCGGAGTTTGGTTCTGCTGCAGCTGAAGAGGAGTTTGTGCCCGGCTCTATGTTCCTGCCTAATGATTTTGATGAACAGATCGATTATCTGGAACAGTTTGGATCGAGCACTTTTAAGGAGTCTGCCCTGCGTAAGCAGTCACTGTATTTGAAGTTTGACCCTCTGGTGAAGGAAAGTCCTAAGAAAACAGCATCAGCAGACAGCACAAATTCTGGATTCTGCCTTCCACGGCCTTCCCTCGCCATCCGGATGATGGAAGCTGCAAAATCTGAGGTGAAGCAGAAATCTCAGCAGGAAAGCCCAAAGCTACTGGAGGATTTCCCACCACTTGTGGTTGAAGCCCCTGTGGTTCAGGATCCCACTGTGCTGGACCTGCTGGTGCCTACCCTCAAACAGCCACAAAAGAGTGAGGGTGTGATTGTGGATGTGCTGAAGTATAGCCAGAAAGATATGGATGCTGCCATGGAAAGGGCACGTAAACAGGCTGAAGAGAAGGAGGAAGAACTTAAGGCTCAGATTGCAAAAATGACTATGGATAACGAACACATGGTATTGATTGTGTCAGAGTTTGAGACCATTATTGCTCAGATCACAGCGGAACACAAGCAGAAGGAAGAGCTGGTGCAGGCAGAGCTGAGTAAAgtctttcaggagaaacaacAGCTGGCTAAAGACTTGAACGATATGGAGCGCTCCTTCTCAGATGTAGTCAAGCGCCTGGACCGACGCAAGGAGGTCATCGACGGCTTTAAGAAGAATGAAGAGACTCTGAAACAGTGTGCACAGAGCTATCTGGCTAGGCTGCAGAAGGAGGAGCAGCGCTACCAAATGCTGAAAACCCATGCAGAGGAAAAGATTGAGCAGGCAAATAAAGAGATTGCAGATGTGCGTTCCAAACTTGGCACAGAGATTTCTGCACTTCAGGTTCAGCTGAGGCGGGAGCAGCTCAAAGTGCAATCACTAGAGAAGAACCTGGAGCAAAAGGTAAAGGAGGTGGAAGATGTCACCAAGCTGTGTGATGAGCTGATTATGAAAGTGCAGAAGCACtaaaacttttatttctgtttgtctgtctttgtatgtctcttgttcttgttcttacctaaatgaataaaaaaaaaaattacaatgttCACAC

Function

GO: NA

KEGG:

id description
K14283 TACC3, maskin; transforming acidic coiled-coil-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247561.3 False 3256 mRNA 0.46 16 36691081 36700401
XM_007247562.3 True 3294 mRNA 0.46 17 36691081 36700401

Neighbor

gene id symbol gene type direction distance location
LOC103028640 LOC108440913 coding upstream 16975 36669635 ~ 36674106 (+)
LOC103029801 dst coding upstream 116741 36423112 ~ 36574340 (+)
rab23 rab23,LOC107699166 coding upstream 309105 36361444 ~ 36381976 (+)
LOC103034782 NA coding upstream 334511 36322340 ~ 36356570 (+)
perp perp coding upstream 537296 36146962 ~ 36153785 (+)
kif15 kif15 coding downstream 4278 36704679 ~ 36731431 (+)
tdrd9 tdrd9 coding downstream 35449 36735850 ~ 36767233 (+)
LOC103026999 NA coding downstream 126632 36827033 ~ 36856163 (+)
pcnx4 pcnx4,LOC107683173 coding downstream 158551 36858952 ~ 36877930 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding downstream 198655 36899056 ~ 36927397 (+)
G221891 NA non-coding upstream 67286 36620288 ~ 36623795 (+)
G221879 NA non-coding upstream 245709 36443306 ~ 36445372 (+)
G221872 bag2 non-coding upstream 300887 36387252 ~ 36390194 (+)
G221871 NA non-coding upstream 305542 36365601 ~ 36385539 (+)
G221856 NA non-coding upstream 412329 36278507 ~ 36278752 (+)
G221973 NA non-coding downstream 26117 36726518 ~ 36728089 (+)
G221995 NA non-coding downstream 133626 36834027 ~ 36958193 (+)
G221993 NA non-coding downstream 174839 36875240 ~ 36923898 (+)
G222004 NA non-coding downstream 188279 36888680 ~ 36897632 (+)
G222103 NA non-coding downstream 350819 37051220 ~ 37052681 (+)
G221878 NA other upstream 282040 36403148 ~ 36409041 (+)
G221737 NA other upstream 634391 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 718727 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 802266 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1472703 35208431 ~ 35218378 (+)
mnat1 mnat1 other downstream 276005 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 300684 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2035538 38735939 ~ 38744184 (+)
oip5 NA other downstream 2194472 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 2497306 39197707 ~ 39271138 (+)

Expression


Co-expression Network