LOC103028640 (LOC108440913)


Basic Information

Item Value
gene id LOC103028640
gene name LOC108440913
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36669635 ~ 36674106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247564.3
ATACGTGGGCGTGGCCTGCGCTACTCCGGCTACACAAAGACGCAGCTGTTGGCGCGAAAAGTGTGTTAGGGGTGCGGCCGCGACTGGAAACCAGACACCCGCACAGCGTCTGCTTTATAACTGTAATTCCCCGCACCGGGCCGCCCCGCACAGCGTGAGGGGGAGCGGGGAGAGGCTTTGtgagccgcgagcttctccggctggttattgtgtgtgtgaggagttgGCCGGGACGCGCGAGCCGGCGCTTTCTTttgtcttcttctcttcttgtcCCGTCGCGCGGCCGTCCGTCCGGCTGCAGCGCGAGCTCACAGTAGCACACATGAGCCGTTGGTGAAGCTTGCCCCACGATGCCCGGACTTGGCTGTGCCATGGCTCCTGACCAGATCTGGCCCATGGAGCTTGAGGCCCAGCAACACTACTTCTACTATGATGGGCTGGACACCGGGGAGGACTTCTACAAGTCAACAGCACCCAGCGAGGATATCTGGAAGAAGTTTGAGCTGCTTCCCACTCCGCCTGTGTCGCCCTCAAGGTTCGAATTGGAGTGCCCAGGCTGGATGGCACTGAAGCCCTCTTTCGAGGAGGATTATGGTTCTTCGTATGACCTGGAGTTGGAGCCGCTGGACGTTCTGGCCAACCTGAGCTCCATCGTATTAAAGGACTGCATGTGGAGCGGCCTGGCCAGTCAGCAGCTGGAGAAGGTCACCAGAGATGCCAAGGCCGTTCCAATGATGAGGACTCAGCGGGTGGCACCAGCCACAGCGCATACATACAGCAGCCCTGCCACACAGTGCGTGAACCCGGCAGCTGTGCTCAGCCTCCCAGGACATCATGGAAAGAAGACTGCCTCAGGCTCGTCTGGCTCAGACTCTCACTCAGACTCATCCGATGATGATGAAATAGACGTGGTGACCGTGGACAACAGGCCCAAACGTGGTCGCCCTCCTGGCCGCCGAACCCCAGTTACCATTGCGGTCAGTGCTGACCCCCACGGGCCCTGTCCCAAACACTTCCACATCTCGCTGCACAGGCAGCAGCACAACTACGCCGCCCCGTCACCAGAGTCTGACCACGAAGAAGAGGATCATCTAGAACCTGAGGAAAAAAGAGCCAGACTGGAGTGCTCGTCTTCATCTTCGTCTTCATCTCCCCTCTCTTCTCCCGCCAGCTCAGACTCTGAGGACGCCACAGAGCAGCGGCGGAACTTTCTAGAGAGGAAAAGAAGGGACAATCTTCGCTCTCGTTTCCAGGCGCTTCGTGGAGAAATCCCAGGACTTTCAGAATGCGCCAAGACCTCAAAAGTAGCCATCCTGACCCGGGCCACAGAATATCTGACGCAGCTTAGGGCATGCGAGCGAAGACAAAATCAAGAGAGGAAAAAGCTCAAggcaaaacagcagcagctgctcCGTAAAATCAGTGCGCTGAAGAACTGATTAAGTGACCGTTTGGACTAGTCCGGTGGTCAGAGACTGTAAAGGGATTGCTTCACAAAGCAgtctaaaccaaaataaaccaaaagtCAGTCCTGTTCAGTAGCAGGAGAGCTAAAGGACACCTCTGTTTTTGGAACTCTTGGCTCAGGTCCAGGTTGGTTAACTGGATTTGGTTAAGTTGGAGCAAAAATTTTACCTGTCCGATACAAACACCCTTTATGTCCCTTATTTTTTCATGCTGGACAGGTTTTTATTCTGGATTAATCTATCAGGTTAACTAATGGATCCTGTTGAAATGCACATCTGTCTAAACTCAACATCTAGTTTAATTCCTGCTTTATTTTGGACGGTTCGGATTAAAACGCTAATGTAAAAAGGAGCAAAACAGATCCAGCTAGCCTATTGCCTTCATTAGCTGGGCTGGATTTGCCTGAAACTGCAGGTGTTCTTGGTCTGTAATTCCCTATTTGTTATACTCGTCATTCATAAATTGGTCTAATGATTAAAACAAGAGCTGCAGGAAGGTTCTTTCCAACCTGGGGGACTTTGCACCTTCTGACCATTAAAGGTTCTGAAAATGTTTGTTCCTTTTGCTCATCGCTGTAGTGATATGGGTAGTGAAGGGTAATTGGTTTCAGGGTGGGGGAACTCACTAACTGAATGCTCCTCAAGGATGTCCCAGTTAGCTCTGTAATTTGACCATGTGTCCAACCCAATTGCTGTATGCTGCATCTGCACTGCATATTGCGCTTATTGAAATTGGCATGTAAAAATCCTGGAGTATTCCTTTAATCCAAAAGTCAGTGGAAGGACTTTTGGATGATCCTCATTTTGGGCTAAGTCCAgtaactaactaaaaaaaatcctgtttgaGTACATTCTTATTGCAGGTAAACATGTGTGAAATGGTTGAGCAAACCTTCCAACTCAGGAGAAAAATGATAGcaggcttgtgtgtgtgagtgtgaatgtgtgcatgtgagagACCGTAAGTGGAATTTAGTGACTGTTTTGAGTGCTAGTGTGCTTCTGATCGTGTGTGTTTGGGTAAGTGTTATTCATGCAGGGGACACTCTAAGTGATTGTGTTGATCTAAGATCATGCTTTGCCAGAATTTACCTCATTTCTATCTGTGTGCAGGTCTAACATCAGTGGAGTTGCACATGCTTGTTTATATAAAGTATGAATTATGATGATGAGATGAATTATGTTTCTTTTGTACATAAGAATCTACACATTTGGACTGTATTGTAAATATTCACCTGGGTGGCTTCCTCACTTCGTACAGAATCTACCTAAGAGCATCACAGATtctattttgctaaaaaaataaatgcattaaaaaaa
>XM_022685051.1
ATACGTGGGCGTGGCCTGCGCTACTCCGGCTACACAAAGACGCAGCTGTTGGCGCGAAAAGTGTGTTAGGGGTGCGGCCGCGACTGGAAACCAGACACCCGCACAGCGTCTGCTTTATAACTGTAATTCCCCGCACCGGGCCGCCCCGCACAGCGTGAGGGGGAGCGGGGAGAGGCTTTGtgagccgcgagcttctccggctggttattgtgtgtgtgaggagttgGCCGGGACGCGCGAGCCGGCGCTTTCTTttgtcttcttctcttcttgtcCCGTCGCGCGGCCGTCCGTCCGGCTGCAGCGCGAGCTCACAGTAGCACACATGAGCCGTTGGTGAAGCTTGCCCCACGATGCCCGGACTTGGCTGTGCCATGGCTCCTGACCAGATCTGGCCCATGGAGCTTGAGGCCCAGCAACACTACTTCTACTATGATGGGCTGGACACCGGGGAGGACTTCTACAAGTCAACAGCACCCAGCGAGGATATCTGGAAGAAGTTTGAGCTGCTTCCCACTCCGCCTGTGTCGCCCTCAAGGTTCGAATTGGAGTGCCCAGGCTGGATGGCACTGAAGCCCTCTTTCGAGGAGGATTATGGTTCTTCGTATGACCTGGAGTTGGAGCCGCTGGACGTTCTGGCCAACCTGAGCTCCATCGTATTAAAGGACTGCATGTGGAGCGGCCTGGCCAGTCAGCAGCTGGAGAAGGTCACCAGAGATGCCAAGGCCGTTCCAATGATGAGGACTCAGCGGGTGGCACCAGCCACAGCGCATACATACAGCAGCCCTGCCACACAGTGCGTGAACCCGGCAGCTGTGCTCAGCCTCCCAGGACATCATGGAAAGAAGACTGCCTCAGGCTCGTCTGGCTCAGACTCTCACTCAGACTCATCCGATGATGAAATAGACGTGGTGACCGTGGACAACAGGCCCAAACGTGGTCGCCCTCCTGGCCGCCGAACCCCAGTTACCATTGCGGTCAGTGCTGACCCCCACGGGCCCTGTCCCAAACACTTCCACATCTCGCTGCACAGGCAGCAGCACAACTACGCCGCCCCGTCACCAGAGTCTGACCACGAAGAAGAGGATCATCTAGAACCTGAGGAAAAAAGAGCCAGACTGGAGTGCTCGTCTTCATCTTCGTCTTCATCTCCCCTCTCTTCTCCCGCCAGCTCAGACTCTGAGGACGCCACAGAGCAGCGGCGGAACTTTCTAGAGAGGAAAAGAAGGGACAATCTTCGCTCTCGTTTCCAGGCGCTTCGTGGAGAAATCCCAGGACTTTCAGAATGCGCCAAGACCTCAAAAGTAGCCATCCTGACCCGGGCCACAGAATATCTGACGCAGCTTAGGGCATGCGAGCGAAGACAAAATCAAGAGAGGAAAAAGCTCAAggcaaaacagcagcagctgctcCGTAAAATCAGTGCGCTGAAGAACTGATTAAGTGACCGTTTGGACTAGTCCGGTGGTCAGAGACTGTAAAGGGATTGCTTCACAAAGCAgtctaaaccaaaataaaccaaaagtCAGTCCTGTTCAGTAGCAGGAGAGCTAAAGGACACCTCTGTTTTTGGAACTCTTGGCTCAGGTCCAGGTTGGTTAACTGGATTTGGTTAAGTTGGAGCAAAAATTTTACCTGTCCGATACAAACACCCTTTATGTCCCTTATTTTTTCATGCTGGACAGGTTTTTATTCTGGATTAATCTATCAGGTTAACTAATGGATCCTGTTGAAATGCACATCTGTCTAAACTCAACATCTAGTTTAATTCCTGCTTTATTTTGGACGGTTCGGATTAAAACGCTAATGTAAAAAGGAGCAAAACAGATCCAGCTAGCCTATTGCCTTCATTAGCTGGGCTGGATTTGCCTGAAACTGCAGGTGTTCTTGGTCTGTAATTCCCTATTTGTTATACTCGTCATTCATAAATTGGTCTAATGATTAAAACAAGAGCTGCAGGAAGGTTCTTTCCAACCTGGGGGACTTTGCACCTTCTGACCATTAAAGGTTCTGAAAATGTTTGTTCCTTTTGCTCATCGCTGTAGTGATATGGGTAGTGAAGGGTAATTGGTTTCAGGGTGGGGGAACTCACTAACTGAATGCTCCTCAAGGATGTCCCAGTTAGCTCTGTAATTTGACCATGTGTCCAACCCAATTGCTGTATGCTGCATCTGCACTGCATATTGCGCTTATTGAAATTGGCATGTAAAAATCCTGGAGTATTCCTTTAATCCAAAAGTCAGTGGAAGGACTTTTGGATGATCCTCATTTTGGGCTAAGTCCAgtaactaactaaaaaaaatcctgtttgaGTACATTCTTATTGCAGGTAAACATGTGTGAAATGGTTGAGCAAACCTTCCAACTCAGGAGAAAAATGATAGcaggcttgtgtgtgtgagtgtgaatgtgtgcatgtgagagACCGTAAGTGGAATTTAGTGACTGTTTTGAGTGCTAGTGTGCTTCTGATCGTGTGTGTTTGGGTAAGTGTTATTCATGCAGGGGACACTCTAAGTGATTGTGTTGATCTAAGATCATGCTTTGCCAGAATTTACCTCATTTCTATCTGTGTGCAGGTCTAACATCAGTGGAGTTGCACATGCTTGTTTATATAAAGTATGAATTATGATGATGAGATGAATTATGTTTCTTTTGTACATAAGAATCTACACATTTGGACTGTATTGTAAATATTCACCTGGGTGGCTTCCTCACTTCGTACAGAATCTACCTAAGAGCATCACAGATtctattttgctaaaaaaataaatgcattaaaaaaa

Function

NR:

description
PREDICTED: protein L-Myc-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247564.3 True 2789 mRNA 0.49 3 36669635 36674106
XM_022685051.1 False 2786 mRNA 0.49 3 36669635 36674106

Neighbor

gene id symbol gene type direction distance location
LOC103029801 dst coding upstream 95295 36423112 ~ 36574340 (+)
rab23 rab23,LOC107699166 coding upstream 287659 36361444 ~ 36381976 (+)
LOC103034782 NA coding upstream 313065 36322340 ~ 36356570 (+)
perp perp coding upstream 515850 36146962 ~ 36153785 (+)
wdr92 wdr92 coding upstream 561406 36103079 ~ 36108229 (+)
LOC103027910 NA coding downstream 16975 36691081 ~ 36700401 (+)
kif15 kif15 coding downstream 30573 36704679 ~ 36731431 (+)
tdrd9 tdrd9 coding downstream 61744 36735850 ~ 36767233 (+)
LOC103026999 NA coding downstream 152927 36827033 ~ 36856163 (+)
pcnx4 pcnx4,LOC107683173 coding downstream 184846 36858952 ~ 36877930 (+)
G221891 NA non-coding upstream 45840 36620288 ~ 36623795 (+)
G221879 NA non-coding upstream 224263 36443306 ~ 36445372 (+)
G221872 bag2 non-coding upstream 279441 36387252 ~ 36390194 (+)
G221871 NA non-coding upstream 284096 36365601 ~ 36385539 (+)
G221856 NA non-coding upstream 390883 36278507 ~ 36278752 (+)
G221973 NA non-coding downstream 52412 36726518 ~ 36728089 (+)
G221995 NA non-coding downstream 159921 36834027 ~ 36958193 (+)
G221993 NA non-coding downstream 201134 36875240 ~ 36923898 (+)
G222004 NA non-coding downstream 214574 36888680 ~ 36897632 (+)
G222103 NA non-coding downstream 377114 37051220 ~ 37052681 (+)
G221878 NA other upstream 260594 36403148 ~ 36409041 (+)
G221737 NA other upstream 612945 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 697281 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 780820 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1451257 35208431 ~ 35218378 (+)
mnat1 mnat1 other downstream 302300 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 326979 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2061833 38735939 ~ 38744184 (+)
oip5 NA other downstream 2220767 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 2523601 39197707 ~ 39271138 (+)

Expression


Co-expression Network